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81. Noise correlations in the human brain and their impact on pattern classification

Author(s):
Bejjanki, Vikranth R.; da Silveira, Rava Azeredo; Cohen, Jonathan D.; Turk-Browne, Nicholas B.
Abstract:
Multivariate decoding methods, such as multivoxel pattern analysis (MVPA), are highly effective at extracting information from brain imaging data. Yet, the precise nature of the information that MVPA draws upon remains controversial. Most current theories emphasize the enhanced sensitivity imparted by aggregating across voxels that have mixed and weak selectivity. However, beyond the selectivity of individual voxels, neural variability is correlated across voxels, and such noise correlations may contribute importantly to accurate decoding. Indeed, a recent computational theory proposed that noise correlations enhance multivariate decoding from heterogeneous neural populations. Here we extend this theory from the scale of neurons to functional magnetic resonance imaging (fMRI) and show that noise correlations between heterogeneous populations of voxels (i.e., voxels selective for different stimulus variables) contribute to the success of MVPA. Specifically, decoding performance is enhanced when voxels with high vs. low noise correlations (measured during rest or in the background of the task) are selected during classifier training. Conversely, voxels that are strongly selective for one class in a GLM or that receive high classification weights in MVPA tend to exhibit high noise correlations with voxels selective for the other class being discriminated against. Furthermore, we use simulations to show that this is a general property of fMRI data and that selectivity and noise correlations can have distinguishable influences on decoding. Taken together, our findings demonstrate that if there is signal in the data, the resulting above-chance classification accuracy is modulated by the magnitude of noise correlations.
Type:
Dataset
Issue Date:
August 2017

85. A Reduced Resistive Wall Mode Kinetic Stability Model for Disruption Forecasting

Author(s):
Berkery, J.W.; Sabbagh, S.A.; Bell, R.E.; Gerhardt, S.P.; LeBlanc, B.P.
Abstract:
Kinetic modification of ideal stability theory from stabilizing resonances of mode-particle interaction has had success in explaining resistive wall mode (RWM) stability limits in tokamaks. With the goal of real-time stability forecasting, a reduced kinetic stability model has been implemented in the new Disruption Event Characterization and Forecasting (DECAF) code, which has been written to analyze disruptions in tokamaks. The reduced model incorporates parameterized models for ideal limits on beta, a ratio of plasma pressure to magnetic pressure, which are shown to be in good agreement with DCON code calculations. Increased beta between these ideal limits causes a shift in the unstable region of delta W_K space, where delta W_K is the change in potential energy due to kinetic effects that is solved for by the reduced model, such that it is possible for plasmas to be unstable at intermediate beta but stable at higher beta. Gaussian functions for delta W_K are defined as functions of E cross B frequency and collisionality, with parameters reflecting the experience of the National Spherical Torus Experiment (NSTX). The reduced model was tested on a database of discharges from NSTX and experimentally stable and unstable discharges were separated noticeably on a stability map in E cross B frequency, collisionality space. The reduced model only failed to predict an unstable RWM in 15.6% of cases with an experimentally unstable RWM and performed well on predicting stability for experimentally stable discharges as well.
Type:
Dataset
Issue Date:
May 2017

86. Initial operation of the NSTX-Upgrade real-time velocity diagnostic

Author(s):
Podesta, M; Bell, R.E.
Abstract:
A real-time velocity (RTV) diagnostic based on active charge-exchange recombination spectroscopy is now operational on the National Spherical Torus Experiment-Upgrade (NSTX-U) spherical torus (Menard et al 2012 Nucl. Fusion 52 083015). The system has been designed to supply plasma velocity data in real time to the NSTX-U plasma control system, as required for the implementation of toroidal rotation control. Measurements are available from four radii at a maximum sampling frequency of 5 kHz. Post-discharge analysis of RTV data provides additional information on ion temperature, toroidal velocity and density of carbon impurities. Examples of physics studies enabled by RTV measurements from initial operations of NSTX-U are discussed.
Type:
Dataset
Issue Date:
November 2016

87. Initial transport and turbulence analysis and gyrokinetic simulation validation in NSTX-U L-mode plasmas

Author(s):
Guttenfelder, W.; Kaye, S.M.; Kreite, D.M.; Bell, R.E.; Diallo, A.; LeBlanc, B.P.; McKee, G.R.; Podesta, M.; Sabbagh, S.A.; Smith, D.R.
Abstract:
Transport analysis, ion-scale turbulence measurements, and initial linear and nonlinear gyrokinetic simulations are reported for a transport validation study based on low aspect ratio NSTX-U L-mode discharges. The relatively long, stationary L-modes enabled by the upgraded centerstack provide a more ideal target for transport validation studies that were not available during NSTX operation. Transport analysis shows that anomalous electron transport dominates energy loss while ion thermal transport is well described by neoclassical theory. Linear gyrokinetic GYRO analysis predicts that ion temperature gradient (ITG) modes are unstable around normalized radii $\rho$=0.6-0.8, although $E\timesB$ shearing rates are larger than the linear growth rates over much of that region. Deeper in the core ($\rho$=0.4-0.6), electromagnetic microtearing modes (MTM) are unstable as a consequence of the relatively high beta and collisionality in these particular discharges. Consistent with the linear analysis, local, nonlinear ion-scale GYRO simulations predict strong ITG transport at $\rho$=0.76, whereas electromagnetic MTM transport is important at $\rho$=0.47. The prediction of ion-scale turbulence is consistent with 2D beam emission spectroscopy (BES) that measures the presence of broadband ion-scale fluctuations. Interestingly, the BES measurements also indicate the presence of bi-modal poloidal phase velocity propagation that could be indicative of two different turbulence types. However, in the region between ($\rho$=0.56, 0.66), ion-scale simulations are strongly suppressed by the locally large $E\timesB$ shear. Instead, electron temperature gradient (ETG) turbulence simulations predict substantial transport, illustrating electron-scale contributions can be important in low aspect ratio L-modes, similar to recent analysis at conventional aspect ratio. However, agreement within experimental uncertainties has not been demonstrated, which requires additional simulations to test parametric sensitivities. The potential need to include profile-variation effects (due to the relatively large value of $\rho_*$=$\rho_i$/a at low aspect ratio), including electromagnetic and possibly multi-scale effects, is also discussed.
Type:
Dataset
Issue Date:
March 2019

88. The Role of Recti ed Currents in Far-Field RF Sheaths and in SOL Losses of HHFW Power on NSTX

Author(s):
Perkins, R.J.; Hosea, J.C.; Jaworski, M.A.; Bell, R.E.; Bertelli, N.; Kramer, G.J.; Roquemore, L.; Taylor, G.; Wilson, J.R.
Abstract:
Radio-frequency (RF) rectification is an important sheath phenomenon for wave heating of plasma in fusion devices and is proposed to be the mechanism responsible for converting highharmonic fast-wave (HHFW) power in the National Spherical Torus eXperiment (NSTX) into a heat ux to the divertor. RF rectification has two aspects: current rectification and voltage recti- fication, and, while the latter is emphasized in many application, we demonstrate the importance of current rectification in analysis of the NSTX divertor during HHFW heating. When rectified currents are accounted for in first-principle models for the heat ux to the tiles, we predict a sizeable enhancement for the heat ux in the presence of an RF field: for one case studied, the predicted heat ux increases from 0:103 MW=m2 to 0:209 MW=m2. We also demonstrate how this rectification scales with injected HHFW power by tracking probe characteristics during a HHFW power ramp; the rectified current may be clamped at a certain level. This work is important for minimizing SOL losses of HHFW power in NSTX-U but may also have implications for near-field studies of ICRF antennae: ignoring rectified current may lead to underestimated heat uxes and overestimated rectified voltages.
Type:
Dataset
Issue Date:
May 2017

89. Inversion technique to obtain local ion temperature profiles for an axisymmetric plasma with toroidal and radial velocities

Author(s):
Bell, Ronald E.
Abstract:
A matrix inversion technique is derived to calculate local ion temperature from line-integrated measurements of an extended emission source in an axisymmetric plasma which exactly corrects for both toroidal velocity and radial velocity components. Local emissivity and toroidal velocity can be directly recovered from line-integrated spectroscopic measurements, but an independent measurement of the radial velocity is necessary to complete the temperature inversion. The extension of this technique to handle the radial velocity is relevant for magnetic reconnection and merging compression devices where temperature inversion from spectroscopic measurements is desired. A simulation demonstrates the effects of radial velocity on the determination of ion temperature.
Type:
Dataset
Issue Date:
February 2021

90. Density perturbation mode structure of high frequency compressional and global Alfvén eigenmodes in the National Spherical Torus Experiment using a novel reflectometer analysis technique

Author(s):
Crocker, N.A.; Kubota, S.; Peebles, W.A.; Rhodes, T.L.; Fredrickson, E.D.; Belova, E.; Diallo, A.; LeBlanc, B.P.; Sabbagh, S.A.
Abstract:
Reflectometry measurements of compressional (CAE) and global (GAE) Alfvén eigenmodes are analyzed to obtain the amplitude and spatial structure of the density perturbations associated with the modes. A novel analysis technique developed for this purpose is presented. The analysis also naturally yields the amplitude and spatial structure of the density contour radial displacement, which is found to be 2–4 times larger than the value estimated directly from the reflectometer measurements using the much simpler ‘mirror approximation’. The modes were driven by beam ions in a high power (6 MW) neutral beam heated H-mode discharge (#141398) in the National Spherical Torus Experiment. The results of the analysis are used to assess the contribution of the modes to core energy transport and ion heating. The total displacement amplitude of the modes, which is shown to be larger than previously estimated (Crocker et al 2013 Nucl. Fusion 53 43017), is compared to the predicted threshold (Gorelenkov et al 2010 Nucl. Fusion 50 84012) for the anomalously high heat diffusion inferred from transport modeling in similar NSTX discharges. The results of the analysis also have strong implications for the energy transport via coupling of CAEs to kinetic Alfvén waves seen in simulations with the Hybrid MHD code (Belova et al 2015 Phys. Rev. Lett. 115 15001). Finally, the amplitudes of the observed CAEs fall well below the threshold for causing significant ion heating by stochastic velocity space diffusion (Gates et al 2001 Phys. Rev. Lett. 87 205003).
Type:
Dataset
Issue Date:
November 2017

91. Analytic stability boundaries for compressional and global Alfven eigenmodes driven by fast ions. II. Interaction via Landau resonance.

Author(s):
Lestz, J.B.; Gorelenkov, N.N.; Belova, E.V.; Tang, S.X.; Crocker, N.A.
Abstract:
Conditions for net fast ion drive are derived for beam-driven, co-propagating, sub-cyclotron compressional (CAE) and global (GAE) Alfven eigenmodes driven by the Landau resonance with super-Alfvenic fast ions. Approximations applicable to realistic neutral beam distributions and mode characteristics observed in spherical tokamaks enable the derivation of marginal stability conditions for these modes. Such conditions successfully reproduce the stability boundaries found from numerical integration of the exact expression for local fast ion drive/damping. Coupling between the CAE and GAE branches of the dispersion due to finite \omega/\omega_{ci} and k_\parallel/k_\perp is retained and found to be responsible for the existence of the GAE instability via this resonance. Encouraging agreement is demonstrated between the approximate stability criterion, simulation results, and a database of NSTX observations of co-CAEs.
Type:
Dataset
Issue Date:
January 2020

92. Energetic-particle-modified global Alfven eigenmodes

Author(s):
Lestz, J.B.; Belova, E.V.; Gorelenkov, N.N.
Abstract:
Fully self-consistent hybrid MHD/particle simulations reveal strong energetic particle modifications to sub-cyclotron global Alfven eigenmodes (GAE) in low-aspect ratio, NSTX-like conditions. Key parameters defining the fast ion distribution function -- the normalized injection velocity v_0/v_A and central pitch -- are varied in order to study their influence on the characteristics of the excited modes. It is found that the frequency of the most unstable mode changes significantly and continuously with beam parameters, in accordance with the Doppler-shifted cyclotron resonances which drive the modes, and depending most substantially on v_0/v_A. This unexpected result is present for both counter-propagating GAEs, which are routinely excited in NSTX, and high frequency co-GAEs, which have not been previously studied. Large changes in frequency without clear corresponding changes in mode structure could indicate the existence of a new energetic particle mode, referred to here as an energetic-particle-modified GAE (EP-GAE). Additional simulations conducted for a fixed MHD equilibrium demonstrate that the GAE frequency shift cannot be explained by the equilibrium changes due to energetic particle effects.
Type:
Dataset
Issue Date:
December 2017

93. Hybrid simulations of sub-cyclotron compressional and global Alfven Eigenmode stability in spherical tokamaks

Author(s):
Lestz, J.B.; Belova, E.V.; Gorelenkov, N.N
Abstract:
A comprehensive numerical study has been conducted in order to investigate the stability of beam-driven, sub-cyclotron frequency compressional (CAE) and global (GAE) Alfven Eigenmodes in low aspect ratio plasmas for a wide range of beam parameters. The presence of CAEs and GAEs has previously been linked to anomalous electron temperature profile flattening at high beam power in NSTX experiments, prompting further examination of the conditions for their excitation. Linear simulations are performed with the hybrid MHD-kinetic initial value code HYM in order to capture the general Doppler-shifted cyclotron resonance that drives the modes. Three distinct types of modes are found in simulations -- co-CAEs, cntr-GAEs, and co-GAEs -- with differing spectral and stability properties. The simulations reveal that unstable GAEs are more ubiquitous than unstable CAEs, consistent with experimental observations, as they are excited at lower beam energies and generally have larger growth rates. Local analytic theory is used to explain key features of the simulation results, including the preferential excitation of different modes based on beam injection geometry and the growth rate dependence on the beam injection velocity, critical velocity, and degree of velocity space anisotropy. The background damping rate is inferred from simulations and estimated analytically for relevant sources not present in the simulation model, indicating that co-CAEs are closer to marginal stability than modes driven by the cyclotron resonances.
Type:
Dataset
Issue Date:
March 2021

94. Nonlinear simulations of beam-driven Compressional Alfvén Eigenmodes in NSTX

Author(s):
Belova, E.V.; Gorelenkov, N.N.; Crocker, N.A.; Lestz, J.B.; Fredrickson, E.D.; Tang, S.; Tritz, K.
Abstract:
Results of 3D nonlinear simulations of neutral-beam-driven compressional Alfven eigenmodes (CAEs) in the National Spherical Torus Experiment (NSTX) are presented. Hybrid MHD-particle simulations for the H-mode NSTX discharge (shot 141398) using the HYM code show unstable CAE modes for a range of toroidal mode numbers, n=4-9, and frequencies below the ion cyclotron frequency. It is found that the essential feature of CAEs is their coupling to kinetic Alfven wave (KAW) that occurs on the high-field side at the Alfven resonance location. High-frequency Alfven eigenmodes are frequently observed in beam-heated NSTX plasmas, and have been linked to flattening of the electron temperature profiles at high beam power. Coupling between CAE and KAW suggests an energy channeling mechanism to explain these observations, in which beam-driven CAEs dissipate their energy at the resonance location, therefore significantly modifying the energy deposition profile. Nonlinear simulations demonstrate that CAEs can channel the energy of the beam ions from the injection region near the magnetic axis to the location of the resonant mode conversion at the edge of the beam density profile. A set of nonlinear simulations show that the CAE instability saturates due to nonlinear particle trapping, and a large fraction of beam energy can be transferred to several unstable CAEs of relatively large amplitudes and absorbed at the resonant location. Absorption rate shows a strong scaling with the beam power.
Type:
Dataset
Issue Date:
April 2017

95. Data for "Ammonia Dry Deposition in an Alpine Ecosystem Traced to Agricultural Emission Hotpots"

Author(s):
Pan, Da; Benedict, Katherine; Golston, Levi; Wang, Rui; Collett, Jeffrey Jr; Tao, Lei; Sun, Kang; Guo, Xuehui; Ham, Jay; Prenni, Anthony; Schichtel, Bret; Mikoviny, Tomas; Müller, Markus; Wisthaler, Armin; Zondlo, Mark
Abstract:
Elevated reactive nitrogen (Nr) deposition is a concern for alpine ecosystems, and dry NH3 deposition is a key contributor. Understanding how emission hotspots impact downwind ecosystems through dry NH3 deposition provides opportunities for effective mitigation. However, direct NH3 flux measurements with sufficient temporal resolution to quantify such events are rare. Here, we measured NH3 fluxes at Rocky Mountain National Park (RMNP) during two summers and analyzed transport events from upwind agricultural and urban sources in northeastern Colorado. We deployed open-path NH3 sensors on a mobile laboratory and an eddy covariance tower to measure NH3 concentrations and fluxes. Our spatial sampling illustrated an upslope event that transported NH3 emissions from the hotspot to RMNP. Observed NH3 deposition was significantly higher when backtrajectories passed through only the agricultural region (7.9 ng m-2 s-1) versus only the urban area (1.0 ng m-2 s-1) and both urban and agricultural areas (2.7 ng m-2 s-1). Cumulative NH3 fluxes were calculated using observed, bidirectional modeled, and gap-filled fluxes. More than 40% of the total dry NH3 deposition occurred when air masses were traced back to agricultural source regions. More generally, we identified that 10 (25) more national parks in the U.S. are within 100 (200) km of an NH3 hotspot, and more observations are needed to quantify the impacts of these hotspots on dry NH3 depositions in these regions.
Type:
Dataset
Issue Date:
2021

97. Statistical properties of magnetic structures and energy dissipation during turbulent reconnection in the Earth's magnetotail

Author(s):
Bergstedt, K.; Ji, H.; Jara-Almonte, J.; Yoo, J.; Ergun, R. E.; Chen, L.-J.
Abstract:
We present the first statistical study of magnetic structures and associated energy dissipation observed during a single period of turbulent magnetic reconnection, by using the in situ measurements of the Magnetospheric Multiscale mission in the Earth's magnetotail on 26 July 2017. The structures are selected by identifying a bipolar signature in the magnetic field and categorized as plasmoids or current sheets via an automated algorithm which examines current density and plasma flow. The size of the plasmoids forms a decaying exponential distribution ranging from subelectron up to ion scales. The presence of substantial number of current sheets is consistent with a physical picture of dynamic production and merging of plasmoids during turbulent reconnection. The magnetic structures are locations of significant energy dissipation via electric field parallel to the local magnetic field, while dissipation via perpendicular electric field dominates outside of the structures. Significant energy also returns from particles to fields.
Type:
Dataset
Issue Date:
14 September 2020

98. Application of Benchmarked Kinetic Resistive Wall Mode Stability Codes to ITER, Including Additional Physics

Author(s):
Berkery, J.W.; Wang, Z.R.; Sabbagh, S.A.; Liu, Y.Q.; Betti, R.; Guazotto, L.
Abstract:
Leading resistive wall mode (RWM) stability codes MARS-K [Y. Liu, et al., Phys. Plasmas 15, 112503 (2008)] and MISK [B. Hu, et al., Phys. Plasmas 12, 057301 (2005)] have been previously benchmarked. The benchmarking has now been extended to include additional physics, and used to project the stability of ITER in a realistic operating space. Due to ITER's relatively low plasma rotation and collisionality, collisions and non-resonance rotational effects were both found to have little impact on stability, and these non-resonance rotational effects also will not self-consistently affect the ITER RWM eigenfunction. Resonances between thermal ions and electrons and the expected level of ITER toroidal rotation were found to be important to stability, as were alpha particles, which are not in rotational resonance. MISK calculations show that without alpha particles, ITER is projected to be unstable to the RWM, but the expected level of alphas is calculated to provide a sufficient level of stability.
Type:
Dataset
Issue Date:
October 2017