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81. Noise correlations in the human brain and their impact on pattern classification

Author(s):
Bejjanki, Vikranth R.; da Silveira, Rava Azeredo; Cohen, Jonathan D.; Turk-Browne, Nicholas B.
Abstract:
Multivariate decoding methods, such as multivoxel pattern analysis (MVPA), are highly effective at extracting information from brain imaging data. Yet, the precise nature of the information that MVPA draws upon remains controversial. Most current theories emphasize the enhanced sensitivity imparted by aggregating across voxels that have mixed and weak selectivity. However, beyond the selectivity of individual voxels, neural variability is correlated across voxels, and such noise correlations may contribute importantly to accurate decoding. Indeed, a recent computational theory proposed that noise correlations enhance multivariate decoding from heterogeneous neural populations. Here we extend this theory from the scale of neurons to functional magnetic resonance imaging (fMRI) and show that noise correlations between heterogeneous populations of voxels (i.e., voxels selective for different stimulus variables) contribute to the success of MVPA. Specifically, decoding performance is enhanced when voxels with high vs. low noise correlations (measured during rest or in the background of the task) are selected during classifier training. Conversely, voxels that are strongly selective for one class in a GLM or that receive high classification weights in MVPA tend to exhibit high noise correlations with voxels selective for the other class being discriminated against. Furthermore, we use simulations to show that this is a general property of fMRI data and that selectivity and noise correlations can have distinguishable influences on decoding. Taken together, our findings demonstrate that if there is signal in the data, the resulting above-chance classification accuracy is modulated by the magnitude of noise correlations.
Type:
Dataset
Issue Date:
August 2017

86. A Reduced Resistive Wall Mode Kinetic Stability Model for Disruption Forecasting

Author(s):
Berkery, J.W.; Sabbagh, S.A.; Bell, R.E.; Gerhardt, S.P.; LeBlanc, B.P.
Abstract:
Kinetic modification of ideal stability theory from stabilizing resonances of mode-particle interaction has had success in explaining resistive wall mode (RWM) stability limits in tokamaks. With the goal of real-time stability forecasting, a reduced kinetic stability model has been implemented in the new Disruption Event Characterization and Forecasting (DECAF) code, which has been written to analyze disruptions in tokamaks. The reduced model incorporates parameterized models for ideal limits on beta, a ratio of plasma pressure to magnetic pressure, which are shown to be in good agreement with DCON code calculations. Increased beta between these ideal limits causes a shift in the unstable region of delta W_K space, where delta W_K is the change in potential energy due to kinetic effects that is solved for by the reduced model, such that it is possible for plasmas to be unstable at intermediate beta but stable at higher beta. Gaussian functions for delta W_K are defined as functions of E cross B frequency and collisionality, with parameters reflecting the experience of the National Spherical Torus Experiment (NSTX). The reduced model was tested on a database of discharges from NSTX and experimentally stable and unstable discharges were separated noticeably on a stability map in E cross B frequency, collisionality space. The reduced model only failed to predict an unstable RWM in 15.6% of cases with an experimentally unstable RWM and performed well on predicting stability for experimentally stable discharges as well.
Type:
Dataset
Issue Date:
May 2017

87. Initial operation of the NSTX-Upgrade real-time velocity diagnostic

Author(s):
Podesta, M; Bell, R.E.
Abstract:
A real-time velocity (RTV) diagnostic based on active charge-exchange recombination spectroscopy is now operational on the National Spherical Torus Experiment-Upgrade (NSTX-U) spherical torus (Menard et al 2012 Nucl. Fusion 52 083015). The system has been designed to supply plasma velocity data in real time to the NSTX-U plasma control system, as required for the implementation of toroidal rotation control. Measurements are available from four radii at a maximum sampling frequency of 5 kHz. Post-discharge analysis of RTV data provides additional information on ion temperature, toroidal velocity and density of carbon impurities. Examples of physics studies enabled by RTV measurements from initial operations of NSTX-U are discussed.
Type:
Dataset
Issue Date:
November 2016

88. Initial transport and turbulence analysis and gyrokinetic simulation validation in NSTX-U L-mode plasmas

Author(s):
Guttenfelder, W.; Kaye, S.M.; Kreite, D.M.; Bell, R.E.; Diallo, A.; LeBlanc, B.P.; McKee, G.R.; Podesta, M.; Sabbagh, S.A.; Smith, D.R.
Abstract:
Transport analysis, ion-scale turbulence measurements, and initial linear and nonlinear gyrokinetic simulations are reported for a transport validation study based on low aspect ratio NSTX-U L-mode discharges. The relatively long, stationary L-modes enabled by the upgraded centerstack provide a more ideal target for transport validation studies that were not available during NSTX operation. Transport analysis shows that anomalous electron transport dominates energy loss while ion thermal transport is well described by neoclassical theory. Linear gyrokinetic GYRO analysis predicts that ion temperature gradient (ITG) modes are unstable around normalized radii $\rho$=0.6-0.8, although $E\timesB$ shearing rates are larger than the linear growth rates over much of that region. Deeper in the core ($\rho$=0.4-0.6), electromagnetic microtearing modes (MTM) are unstable as a consequence of the relatively high beta and collisionality in these particular discharges. Consistent with the linear analysis, local, nonlinear ion-scale GYRO simulations predict strong ITG transport at $\rho$=0.76, whereas electromagnetic MTM transport is important at $\rho$=0.47. The prediction of ion-scale turbulence is consistent with 2D beam emission spectroscopy (BES) that measures the presence of broadband ion-scale fluctuations. Interestingly, the BES measurements also indicate the presence of bi-modal poloidal phase velocity propagation that could be indicative of two different turbulence types. However, in the region between ($\rho$=0.56, 0.66), ion-scale simulations are strongly suppressed by the locally large $E\timesB$ shear. Instead, electron temperature gradient (ETG) turbulence simulations predict substantial transport, illustrating electron-scale contributions can be important in low aspect ratio L-modes, similar to recent analysis at conventional aspect ratio. However, agreement within experimental uncertainties has not been demonstrated, which requires additional simulations to test parametric sensitivities. The potential need to include profile-variation effects (due to the relatively large value of $\rho_*$=$\rho_i$/a at low aspect ratio), including electromagnetic and possibly multi-scale effects, is also discussed.
Type:
Dataset
Issue Date:
March 2019

89. Inversion technique to obtain local ion temperature profiles for an axisymmetric plasma with toroidal and radial velocities

Author(s):
Bell, Ronald E.
Abstract:
A matrix inversion technique is derived to calculate local ion temperature from line-integrated measurements of an extended emission source in an axisymmetric plasma which exactly corrects for both toroidal velocity and radial velocity components. Local emissivity and toroidal velocity can be directly recovered from line-integrated spectroscopic measurements, but an independent measurement of the radial velocity is necessary to complete the temperature inversion. The extension of this technique to handle the radial velocity is relevant for magnetic reconnection and merging compression devices where temperature inversion from spectroscopic measurements is desired. A simulation demonstrates the effects of radial velocity on the determination of ion temperature.
Type:
Dataset
Issue Date:
February 2021

90. Density perturbation mode structure of high frequency compressional and global Alfvén eigenmodes in the National Spherical Torus Experiment using a novel reflectometer analysis technique

Author(s):
Crocker, N.A.; Kubota, S.; Peebles, W.A.; Rhodes, T.L.; Fredrickson, E.D.; Belova, E.; Diallo, A.; LeBlanc, B.P.; Sabbagh, S.A.
Abstract:
Reflectometry measurements of compressional (CAE) and global (GAE) Alfvén eigenmodes are analyzed to obtain the amplitude and spatial structure of the density perturbations associated with the modes. A novel analysis technique developed for this purpose is presented. The analysis also naturally yields the amplitude and spatial structure of the density contour radial displacement, which is found to be 2–4 times larger than the value estimated directly from the reflectometer measurements using the much simpler ‘mirror approximation’. The modes were driven by beam ions in a high power (6 MW) neutral beam heated H-mode discharge (#141398) in the National Spherical Torus Experiment. The results of the analysis are used to assess the contribution of the modes to core energy transport and ion heating. The total displacement amplitude of the modes, which is shown to be larger than previously estimated (Crocker et al 2013 Nucl. Fusion 53 43017), is compared to the predicted threshold (Gorelenkov et al 2010 Nucl. Fusion 50 84012) for the anomalously high heat diffusion inferred from transport modeling in similar NSTX discharges. The results of the analysis also have strong implications for the energy transport via coupling of CAEs to kinetic Alfvén waves seen in simulations with the Hybrid MHD code (Belova et al 2015 Phys. Rev. Lett. 115 15001). Finally, the amplitudes of the observed CAEs fall well below the threshold for causing significant ion heating by stochastic velocity space diffusion (Gates et al 2001 Phys. Rev. Lett. 87 205003).
Type:
Dataset
Issue Date:
November 2017