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2. Data for "Cerebellar contributions to a brainwide network for flexible behavior"
- Author(s):
- Verpeut, Jessica; Bergeler, Silke; Kislin, Mikhail; Townes, William; Klibaite, Ugne; Dhanerawala, Zahra; Hoag, Austin; Jung, Caroline; Lee, Junuk; Pisano, Thomas; Seagraves, Kelly; Shaevitz, Joshua; Wang, Samuel
- Type:
- Dataset
- Issue Date:
- 2021
3. Deep Behavioral Phenotyping Of Mouse Autism Models using Open-Field Behavior
- Author(s):
- Klibaite, Ugne; Kislin, Mikhail; Verpeut, Jessica L.; Sun, Xiaoting; Shaevitz, Joshua W.; Wang, Samuel S.-H.
- Type:
- Dataset
- Issue Date:
- 16 February 2021
4. Integrative Mechanisms of Social Attention
- Author(s):
- Bio, Branden; Graziano, Michael
- Abstract:
- Monitoring the attention of others is fundamental to social cognition. Most of the literature on the topic assumes that our social cognitive machinery is tuned specifically to the gaze direction of others as a proxy for attention. This standard assumption reduces attention to an externally visible parameter. Here we show that this assumption is wrong and a deeper, more meaningful representation is involved. We presented subjects with two cues about the attentional state of a face: direction of gaze and emotional expression. We tested whether people relied predominantly on one cue, the other, or both. If the traditional view is correct, then the gaze cue should dominate. Instead, people employed a variety of strategies, some relying on gaze, some on expression, and some on an integration of cues. We also assessed people’s social cognitive ability using two, independent, standard tests. If the traditional view is correct, then social cognitive ability, as assessed by the independent tests, should correlate with the degree to which people successfully use the gaze cue to judge the attention state of the face. Instead, social cognitive ability correlated best with the degree to which people successfully integrated the cues together, instead of with the use of any one specific cue. The results suggest a rethink of a fundamental component of social cognition: monitoring the attention of others involves constructing a deep model that is informed by a combination of cues. Attention is a rich process and monitoring the attention of others involves a similarly rich representation.
- Type:
- Dataset
- Issue Date:
- 22 July 2021
5. Dataset for 'Auditory Activity is Diverse and Widespread Throughout the Central Brain of Drosophila'
- Author(s):
- Pacheco, Diego A; Thiberge, Stephan; Pnevmatikakis, Eftychios; Murthy, Mala
- Abstract:
- Sensory pathways are typically studied starting at receptor neurons and following postsynaptic neurons into the brain. However, this leads to a bias in analysis of activity towards the earliest layers of processing. Here, we present new methods for volumetric neural imaging with precise across-brain registration, to characterize auditory activity throughout the entire central brain of Drosophila and make comparisons across trials, individuals, and sexes. We discover that auditory activity is present in most central brain regions and in neurons responsive to other modalities. Auditory responses are temporally diverse, but the majority of activity is tuned to courtship song features. Auditory responses are stereotyped across trials and animals in early mechanosensory regions, becoming more variable at higher layers of the putative pathway, and this variability is largely independent of spontaneous movements. This study highlights the power of using an unbiased, brain-wide approach for mapping the functional organization of sensory activity.
- Type:
- Dataset
- Issue Date:
- October 2020
6. Sleep spindle refractoriness segregates periods of memory reactivation
- Author(s):
- Antony, James W.; Piloto, Luis; Wang, Margaret; Brooks, Paula P.; Norman, Kenneth A.; Paller, Ken A.
- Abstract:
- The stability of long-term memories is enhanced by reactivation during sleep. Correlative evidence has linked memory reactivation with thalamocortical sleep spindles, although their functional role is not fully understood. Our initial study replicated this correlation and also demonstrated a novel rhythmicity to spindles, such that a spindle is more likely to occur approximately 3–6 s following a prior spindle. We leveraged this rhythmicity to test the role of spindles in memory by using real-time spindle tracking to present cues within versus just after the presumptive refractory period; as predicted, cues presented just after the refractory period led to better memory. Our findings demonstrate a precise temporal link between sleep spindles and memory reactivation. Moreover, they reveal a previously undescribed neural mechanism whereby spindles may segment sleep into two distinct substates: prime opportunities for reactivation and gaps that segregate reactivation events.
- Type:
- Dataset
- Issue Date:
- 4 June 2018
7. Unsupervised identification of the internal states that shape natural behavior
- Author(s):
- Calhoun, Adam; Pillow, Jonathan; Murthy, Mala
- Type:
- Dataset
- Issue Date:
- 28 May 2019
8. Reductions in Retrieval Competition Predict the Benefit of Repeated Testing
- Author(s):
- Rafidi, Nicole S; Hulbert, Justin C; Brooks, Paula P; Norman, Kenneth A
- Abstract:
- Repeated testing (as opposed to repeated study) leads to improved long-term memory retention, but the mechanism underlying this improvement remains controversial. In this work, we test the hypothesis that retrieval practice benefits subsequent recall by reducing competition from related memories. This hypothesis implies that the degree of reduction in competition between retrieval practice attempts should predict subsequent memory for the practiced items. To test this prediction, we collected electroencephalography (EEG) data across two sessions. In the first session, participants practiced selectively retrieving exemplars from superordinate semantic categories (high competition), as well as retrieving the names of the superordinate categories from exemplars (low competition). In the second session, participants repeatedly studied and were then tested on Swahili-English vocabulary. One week after session two, participants were again tested on the vocabulary. We trained a within-subject classifier on the data from session one to distinguish high and low competition states. We then used this classifier to measure competition across multiple retrieval practice attempts in the second session. The degree to which competition decreased for a given vocabulary word predicted whether that item was subsequently remembered in the third session. These results are consistent with the hypothesis that repeated testing improves retention by reducing competition.
- Type:
- Dataset
- Issue Date:
- April 2018
9. Amplification of local changes along the timescale processing hierarchy
- Author(s):
- Yeshurun, Yaara; Nguyen, Mai; Hasson, Uri
- Abstract:
- Small changes in word choice can lead to dramatically different interpretations of narratives. How does the brain accumulate and integrate such local changes to construct unique neural representations for different stories? In this study we created two distinct narratives by changing only a few words in each sentence (e.g. “he” to “she” or “sobbing” to “laughing”) while preserving the grammatical structure across stories. We then measured changes in neural responses between the two stories. We found that the differences in neural responses between the two stories gradually increased along the hierarchy of processing timescales. For areas with short integration windows, such as early auditory cortex, the differences in neural responses between the two stories were relatively small. In contrast, in areas with the longest integration windows at the top of the hierarchy, such as the precuneus, temporal parietal junction, and medial frontal cortices, there were large differences in neural responses between stories. Furthermore, this gradual increase in neural difference between the stories was highly correlated with an area’s ability to integrate information over time. Amplification of neural differences did not occur when changes in words did not alter the interpretation of the story (e.g. “sobbing” to “crying”). Our results demonstrate how subtle differences in words are gradually accumulated and amplified along the cortical hierarchy as the brain constructs a narrative over time.
- Type:
- Dataset
- Issue Date:
- August 2017
10. Natural Movie - Water Surface (Ripples)
- Author(s):
- Ioffe, ML; Berry MJ II.; Palmer SEP
- Type:
- moving image
- Issue Date:
- 2016
11. Noise correlations in the human brain and their impact on pattern classification
- Author(s):
- Bejjanki, Vikranth R.; da Silveira, Rava Azeredo; Cohen, Jonathan D.; Turk-Browne, Nicholas B.
- Abstract:
- Multivariate decoding methods, such as multivoxel pattern analysis (MVPA), are highly effective at extracting information from brain imaging data. Yet, the precise nature of the information that MVPA draws upon remains controversial. Most current theories emphasize the enhanced sensitivity imparted by aggregating across voxels that have mixed and weak selectivity. However, beyond the selectivity of individual voxels, neural variability is correlated across voxels, and such noise correlations may contribute importantly to accurate decoding. Indeed, a recent computational theory proposed that noise correlations enhance multivariate decoding from heterogeneous neural populations. Here we extend this theory from the scale of neurons to functional magnetic resonance imaging (fMRI) and show that noise correlations between heterogeneous populations of voxels (i.e., voxels selective for different stimulus variables) contribute to the success of MVPA. Specifically, decoding performance is enhanced when voxels with high vs. low noise correlations (measured during rest or in the background of the task) are selected during classifier training. Conversely, voxels that are strongly selective for one class in a GLM or that receive high classification weights in MVPA tend to exhibit high noise correlations with voxels selective for the other class being discriminated against. Furthermore, we use simulations to show that this is a general property of fMRI data and that selectivity and noise correlations can have distinguishable influences on decoding. Taken together, our findings demonstrate that if there is signal in the data, the resulting above-chance classification accuracy is modulated by the magnitude of noise correlations.
- Type:
- Dataset
- Issue Date:
- August 2017
12. The Structured `Low Temperature' Phase of the Retinal Population Code
- Author(s):
- Ioffe, Mark Lev; Berry II, Michael J.
- Abstract:
- Recent advances in experimental techniques have allowed the simultaneous recordings of populations of hundreds of neurons, fostering a debate about the nature of the collective structure of population neural activity. Much of this debate has focused on the empirical findings of a phase transition in the parameter space of maximum entropy models describing the measured neural probability distributions, interpreting this phase transition to indicate a critical tuning of the neural code. Here, we instead focus on the possibility that this is a first-order phase transition which provides evidence that the real neural population is in a `structured', collective state. We show that this collective state is robust to changes in stimulus ensemble and adaptive state. We find that the pattern of pairwise correlations between neurons has a strength that is well within the strongly correlated regime and does not require fine tuning, suggesting that this state is generic for populations of 100+ neurons. We find a clear correspondence between the emergence of a phase transition, and the emergence of attractor-like structure in the inferred energy landscape. A collective state in the neural population, in which neural activity patterns naturally form clusters, provides a consistent interpretation for our results.
- Type:
- Dataset
- Issue Date:
- 2017
13. Complementary learning systems within the hippocampus: A neural network modeling approach to reconciling episodic memory with statistical learning
- Author(s):
- Schapiro, Anna; Turk-Browne, Nicholas; Botvinick, Matthew; Norman, Kenneth
- Type:
- interactive resource
- Issue Date:
- 2016
14. Dynamic reconfiguration of the default mode network during narrative comprehension
- Author(s):
- Simony, Erez; Honey, Christopher; Chen, Janice; Lositsky, Olga; Yeshurun, Yaara; Wiesel, Ami; Hasson, Uri
- Abstract:
- Does the default mode network (DMN) reconfigure to encode information about the changing environment? This question has proven difficult, because patterns of functional connectivity reflect a mixture of stimulus-induced neural processes, intrinsic neural processes and non-neuronal noise. Here we introduce inter-subject functional correlation (ISFC), which isolates stimulus-dependent inter-regional correlations between brains exposed to the same stimulus. During fMRI, we had subjects listen to a real-life auditory narrative and to temporally scrambled versions of the narrative. We used ISFC to isolate correlation patterns within the DMN that were locked to the processing of each narrative segment and specific to its meaning within the narrative context. The momentary configurations of DMN ISFC were highly replicable across groups. Moreover, DMN coupling strength predicted memory of narrative segments. Thus, ISFC opens new avenues for linking brain network dynamics to stimulus features and behaviour.
- Type:
- Dataset
- Issue Date:
- 18 July 2016
15. Natural Movie - Grass Stalks
- Author(s):
- Ioffe, ML; Palmer SEP; Berry MJ II.
- Type:
- moving image
- Issue Date:
- 2016
16. Same story, different story: the neural representation of interpretive frameworks
- Author(s):
- Yeshurun, Yaara; Swanson, S; Simony, Erez; Chen, Janice; Lazaridi, C; Honey, Chris; Hasson, Uri
- Type:
- Dataset
- Issue Date:
- 3 November 2016
17. Sherlock Movie Watching Dataset
- Author(s):
- Chen, Janice
- Abstract:
- Our daily lives revolve around sharing experiences and memories with others. When different people recount the same events, how similar are their underlying neural representations? In this study, participants viewed a fifty-minute audio-visual movie, then verbally described the events while undergoing functional MRI. These descriptions were completely unguided and highly detailed, lasting for up to forty minutes. As each person spoke, event-specific spatial patterns were reinstated (movie-vs.-recall correlation) in default network, medial temporal, and high-level visual areas; moreover, individual event patterns were highly discriminable and similar between people during recollection (recall-vs.-recall similarity), suggesting the existence of spatially organized memory representations. In posterior medial cortex, medial prefrontal cortex, and angular gyrus, activity patterns during recall were more similar between people than to patterns elicited by the movie, indicating systematic reshaping of percept into memory across individuals. These results reveal striking similarity in how neural activity underlying real-life memories is organized and transformed in the brains of different people as they speak spontaneously about past events.
- Type:
- Dataset
- Issue Date:
- 26 October 2016
18. Attentional Modulation of Brain Responses to Primary Appetitive and Aversive Stimuli
- Author(s):
- Cara L. Buck; Jonathan D. Cohen; Field, Brent; Daniel Kahneman; Samuel M. McClure; Leigh E. Nystrom
- Abstract:
- Studies of subjective well-being have conventionally relied upon self-report, which directs subjects’ attention to their emotional experiences. This method presumes that attention itself does not influence emotional processes, which could bias sampling. We tested whether attention influences experienced utility (the moment-by-moment experience of pleasure) by using functional magnetic resonance imaging (fMRI) to measure the activity of brain systems thought to represent hedonic value while manipulating attentional load. Subjects received appetitive or aversive solutions orally while alternatively executing a low or high attentional load task. Brain regions associated with hedonic processing, including the ventral striatum, showed a response to both juice and quinine. This response decreased during the high-load task relative to the low-load task. Thus, attentional allocation may influence experienced utility by modulating (either directly or indirectly) the activity of brain mechanisms thought to represent hedonic value.
- Type:
- Dataset, Software, and text
- Issue Date:
- 11 February 2015