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Start Over Domain Natural Sciences

231. The Attention Schema Theory in an Artificial Neural Network Agent: Controlling Visuospatial Attention Using a Descriptive Model of Attention

Author(s):
Wilterson, Andrew; Graziano, Michael
Abstract:
In the attention schema theory, the brain constructs a model of attention, the attention schema, to aid in the endogenous control of attention. Growing behavioral evidence appears to support this proposal. However, a central question remains: does a controller of attention actually benefit by having access to an attention schema? We constructed an artificial, deep Q-learning, neural network agent that was trained to control a simple form of visuospatial attention, tracking a stimulus with its attention spotlight in order to solve a catch task. The agent was tested with and without access to an attention schema. In both conditions, the agent received sufficient information such that it should, theoretically, be able to learn the task. We found that with an attention schema present, the agent learned to control its attention spotlight and learned the catch task to a high degree of performance. Once the agent learned, if the attention schema was disabled, the agent could no longer perform effectively. If the attention schema was removed before learning began, the agent was drastically impaired at learning. The results show how the presence of even a simple attention schema provides a profound benefit to a controller of attention. We interpret these results as supporting the central argument of AST: the brain evolved an attention schema because of its practical benefit in the endogenous control of attention.
Type:
Dataset and Software
Issue Date:
2021

232. The Role of Recti ed Currents in Far-Field RF Sheaths and in SOL Losses of HHFW Power on NSTX

Author(s):
Perkins, R.J.; Hosea, J.C.; Jaworski, M.A.; Bell, R.E.; Bertelli, N.; Kramer, G.J.; Roquemore, L.; Taylor, G.; Wilson, J.R.
Abstract:
Radio-frequency (RF) rectification is an important sheath phenomenon for wave heating of plasma in fusion devices and is proposed to be the mechanism responsible for converting highharmonic fast-wave (HHFW) power in the National Spherical Torus eXperiment (NSTX) into a heat ux to the divertor. RF rectification has two aspects: current rectification and voltage recti- fication, and, while the latter is emphasized in many application, we demonstrate the importance of current rectification in analysis of the NSTX divertor during HHFW heating. When rectified currents are accounted for in first-principle models for the heat ux to the tiles, we predict a sizeable enhancement for the heat ux in the presence of an RF field: for one case studied, the predicted heat ux increases from 0:103 MW=m2 to 0:209 MW=m2. We also demonstrate how this rectification scales with injected HHFW power by tracking probe characteristics during a HHFW power ramp; the rectified current may be clamped at a certain level. This work is important for minimizing SOL losses of HHFW power in NSTX-U but may also have implications for near-field studies of ICRF antennae: ignoring rectified current may lead to underestimated heat uxes and overestimated rectified voltages.
Type:
Dataset
Issue Date:
May 2017

233. The Structured `Low Temperature' Phase of the Retinal Population Code

Author(s):
Ioffe, Mark Lev; Berry II, Michael J.
Abstract:
Recent advances in experimental techniques have allowed the simultaneous recordings of populations of hundreds of neurons, fostering a debate about the nature of the collective structure of population neural activity. Much of this debate has focused on the empirical findings of a phase transition in the parameter space of maximum entropy models describing the measured neural probability distributions, interpreting this phase transition to indicate a critical tuning of the neural code. Here, we instead focus on the possibility that this is a first-order phase transition which provides evidence that the real neural population is in a `structured', collective state. We show that this collective state is robust to changes in stimulus ensemble and adaptive state. We find that the pattern of pairwise correlations between neurons has a strength that is well within the strongly correlated regime and does not require fine tuning, suggesting that this state is generic for populations of 100+ neurons. We find a clear correspondence between the emergence of a phase transition, and the emergence of attractor-like structure in the inferred energy landscape. A collective state in the neural population, in which neural activity patterns naturally form clusters, provides a consistent interpretation for our results.
Type:
Dataset
Issue Date:
2017

235. The updated ITPA global H-mode confinement database: description and analysis

Author(s):
Verdoolaege, G.; Kaye, S.M.; Angioni, C.; Kardaunn, O.W.J.F.; Maslov, M.; Romanelli, M.; Ryter, F.; Thomsen, K.
Abstract:
The multi-machine ITPA Global H-mode Confinement Database has been upgraded with new data from JET with the ITER-like wall and ASDEX Upgrade with the full tungsten wall. This paper describes the new database and presents results of regression analysis to estimate the global energy confinement scaling in H-mode plasmas using a standard power law. Various subsets of the database are considered, focusing on type of wall and divertor materials, confinement regime (all H-modes, ELMy H or ELM-free) and ITER-like constraints. Apart from ordinary least squares, two other, robust regression techniques are applied, which take into account uncertainty on all variables. Regression on data from individual devices shows that, generally, the confinement dependence on density and the power degradation are weakest in the fully metallic devices. Using the multi-machine scalings, predictions are made of the confinement time in a standard ELMy H-mode scenario in ITER. The uncertainty on the scaling parameters is discussed with a view to practically useful error bars on the parameters and predictions. One of the derived scalings for ELMy H-modes on an ITER-like subset is studied in particular and compared to the IPB98(y,2) confinement scaling in engineering and dimensionless form. Transformation of this new scaling from engineering variables to dimensionless quantities is shown to result in large error bars on the dimensionless scaling. Regression analysis in the space of dimensionless variables is therefore proposed as an alternative, yielding acceptable estimates for the dimensionless scaling. The new scaling, which is dimensionally correct within the uncertainties, suggests that some dependencies of confinement in the multi- machine database can be reconciled with parameter scans in individual devices. This includes vanishingly small dependence of confinement on line-averaged density and normalized plasma pressure (β), as well as a noticeable, positive dependence on effective atomic mass and plasma triangularity. Extrapolation of this scaling to ITER yields a somewhat lower confinement time compared to the IPB98(y, 2) prediction, possibly related to the considerably weaker dependence on major radius in the new scaling (slightly above linear). Further studies are needed to compare more flexible regression models with the power law used here. In addition, data from more devices concerning possible ‘hidden variables’ could help to determine their influence on confinement, while adding data in sparsely populated areas of the parameter space may contribute to further disentangling some of the global confinement dependencies in tokamak plasmas.
Type:
Dataset
Issue Date:
March 2021

236. Theory based scaling of edge turbulence and implications for the scrape-off layer width

Author(s):
Myra, J.R.; Russell, D.A.; Zweben, S.J.
Abstract:
Turbulence and plasma parameter data from the National Spherical Torus Experiment NSTX [M. Ono, S.M. Kaye, Y.-K.M. Peng, G. Barnes et al., Nucl. Fusion 40, 557 (2000)] is examined and interpreted based on various theoretical estimates. In particular, quantities of interest for assessing the role of turbulent transport on the midplane scrape-off layer heat flux width are assessed. Because most turbulence quantities exhibit large scatter and little scaling within a given operation mode, this paper focuses on length and time scales and dimensionless parameters between operational modes including Ohmic, low (L), and high (H) modes using a large NSTX edge turbulence database [S.J. Zweben, W.M. Davis, S.M. Kaye, J.R. Myra et al., Nucl. Fusion 55, 093035 (2015)]. These are compared with theoretical estimates for drift and interchange rates, profile modification saturation levels, a resistive ballooning condition, and dimensionless parameters characterizing L and high H mode conditions. It is argued that the underlying instability physics governing edge turbulence in different operational modes is in fact similar, and is consistent with curvature-driven drift ballooning. Saturation physics, however, is dependent on the operational mode. Five dimensionless parameters for drift-interchange turbulence are obtained and employed to assess the important of turbulence in setting the scrape-off layer heat flux width lambda_q and its scaling. An explicit proportionality of the width lambda_q to safety factor and major radius (qR) is obtained under these conditions. Quantitative estimates and reduced model numerical simulations suggest that the turbulence mechanism is not negligible in determining lambda_q in NSTX, at least for high plasma current discharges.
Type:
Dataset
Issue Date:
November 2016

237. Theory of the tertiary instability and the Dimits shift from reduced drift-wave models

Author(s):
Zhu, Hongxuan; Zhou, Yao; Dodin, I. Y.
Abstract:
Tertiary modes in electrostatic drift-wave turbulence are localized near extrema of the zonal velocity $U(x)$ with respect to the radial coordinate $x$. We argue that these modes can be described as quantum harmonic oscillators with complex frequencies, so their spectrum can be readily calculated. The corresponding growth rate $\gamma_{\rm TI}$ is derived within the modified Hasegawa--Wakatani model. We show that $\gamma_{\rm TI}$ equals the primary-instability growth rate plus a term that depends on the local $U''$; hence, the instability threshold is shifted compared to that in homogeneous turbulence. This provides a generic explanation of the well-known yet elusive Dimits shift, which we find explicitly in the Terry--Horton limit. Linearly unstable tertiary modes either saturate due to the evolution of the zonal density or generate radially propagating structures when the shear $|U'|$ is sufficiently weakened by viscosity. The Dimits regime ends when such structures are generated continuously.
Type:
Dataset
Issue Date:
January 2020

238. Theory of the tertiary instability and the Dimits shift within a scalar model

Author(s):
Zhu, Hongxuan; Zhou Yao; Dodin, I.Y.
Abstract:
The Dimits shift is the shift between the threshold of the drift-wave primary instability and the actual onset of turbulent transport in magnetized plasma. It is generally attributed to the suppression of turbulence by zonal flows, but developing a more detailed understanding calls for consideration of specific reduced models. The modified Terry--Horton system has been proposed by St-Onge [J. Plasma Phys. {\bf 83}, 905830504 (2017)] as a minimal model capturing the Dimits shift. Here, we use this model to develop an analytic theory of the Dimits shift and a related theory of the tertiary instability of zonal flows. We show that tertiary modes are localized near extrema of the zonal velocity $U(x)$, where $x$ is the radial coordinate. By approximating $U(x)$ with a parabola, we derive the tertiary-instability growth rate using two different methods and show that the tertiary instability is essentially the primary drift-wave instability modified by the local $U''$. Then, depending on $U''$, the tertiary instability can be suppressed or unleashed. The former corresponds to the case when zonal flows are strong enough to suppress turbulence (Dimits regime), while the latter corresponds to the case when zonal flows are unstable and turbulence develops. This understanding is different from the traditional paradigm that turbulence is controlled by the flow shear $U'$. Our analytic predictions are in agreement with direct numerical simulations of the modified Terry--Horton system.
Type:
Dataset
Issue Date:
June 2020

239. Three New Extreme Ultraviolet Spectrometers on NSTX-U for Impurity Monitoring

Author(s):
Weller, M.E.; Beiersdorfer, P.; Soukhanovskii, V.; Magee, E.W.; Scotti, F.
Abstract:
Three extreme ultraviolet (EUV) spectrometers have been mounted on the National Spherical Torus Experiment-Upgrade (NSTX-U). All three are flat-field grazing-incidence spectrometers and are dubbed X-ray and Extreme Ultraviolet Spectrometer (8 ñ 70 ≈), Long-Wavelength Extreme Ultraviolet Spectrometer (190 ñ 440 ≈), and Metal Monitor and Lithium Spectrometer Assembly (MonaLisa, 50 ñ 220 ≈). XEUS and LoWEUS were previously implemented on NSTX to monitor impurities from low- to high-Z sources and to study impurity transport while MonaLisa is new and provides the system increased spectral coverage. The spectrometers will also be a critical diagnostic on the planned laser blow-off (LBO) system for NSTX-U, which will be used for impurity edge and core ion transport studies, edge-transport code development, and benchmarking atomic physics codes.
Type:
Dataset
Issue Date:
November 2016

240. Three dimensional archaeocyathide and coral imagery for morphologic analysis

Author(s):
Manzuk, Ryan; Maloof, Adam
Abstract:
In our study, we compare the three dimensional (3D) morphologic characteristics of Earth's first reef-building animals (archaeocyath sponges) with those of modern, photosynthetic corals. Within this repository are the 3D image data products for both groups of animals. The archaeocyath images were produced through serial grinding and imaging with the Grinding, Imaging, and Reconstruction Instrument at Princeton University. The images in this repository are the downsampled data products used in our study, and the full resolution (>2TB) image stacks are available upon request from the author. For the coral image data, the computed tomography (CT) images of all samples are included at full resolution. Also included in this repository are the manual and automated outline coordinates of the archaeocyath and coral branches, which can be directly used for morphological study.
Type:
Dataset, Image, MovingImage, and StillImage
Issue Date:
August 2022