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102. Attention and awareness in the dorsal attention network
- Author(s):
- Wilterson, Andrew; Nastase, Samuel; Bio, Branden; Guterstam, Arvid; Graziano, Michael
- Abstract:
- The attention schema theory (AST) posits a specific relationship between subjective awareness and attention, in which awareness is the control model that the brain uses to aid in the endogenous control of attention. We proposed that the right temporoparietal junction (TPJ) is involved in that interaction between awareness and attention. In previous experiments, we developed a behavioral paradigm in human subjects to manipulate awareness and attention. The paradigm involved a visual cue that could be used to guide a shift of attention to a target stimulus. In task 1, subjects were aware of the visual cue, and their endogenous control mechanism was able to use the cue to help control attention. In task 2, subjects were unaware of the visual cue, and their endogenous control mechanism was no longer able to use it to control attention, even though the cue still had a measurable effect on other aspects of behavior. Here we tested the two tasks while scanning brain activity in human volunteers. We predicted that the right TPJ would be active in relation to the cue in task 1, but not in task 2. This prediction was confirmed. The right TPJ was active in relation to the cue in task 1; it was not measurably active in task 2; the difference was significant. In our interpretation, the right TPJ is involved in a complex interaction in which awareness aids in the control of attention.
- Type:
- Dataset
- Issue Date:
- 2020
103. Data from a flume experiment of passive scalar diffusion within vegetation canopies using laser-induced fluorescence
- Author(s):
- Ghannam, Khaled; Poggi, Davide; Katul, Gabriel; Bou-Zeid, Elie
- Abstract:
- This dataset is a sequence of laser-induced fluorescence images of a dye injected in a channel flow with canopy-like stainless steel rods simulating a vegetation canopy stand. The data is acquired close to the channel bottom at z/h=0.2, where z is the height referenced to the channel bed and h is the canopy height. The dataset provides spatial distribution of scalar concentration in a plane parallel to the channel bed. The data has been used (but the data itself has not been published or available to the public) in previous work. The references are: Ghannam, K., Poggi, D., Porporato, A., & Katul, G. (2015). The spatio-temporal statistical structure and ergodic behaviour of scalar turbulence within a rod canopy. Boundary-Layer Meteorology,157(3), 447–460. Ghannam, K, Poggi, D., Bou-Zeid, E., Katul, G. (2020). Inverse cascade evidenced by information entropy of passive scalars in submerged canopy flows. Geophysical Research Letters (accepted).
- Type:
- Dataset
- Issue Date:
- 22 April 2020
104. Dataset for 'Auditory Activity is Diverse and Widespread Throughout the Central Brain of Drosophila'
- Author(s):
- Pacheco, Diego A; Thiberge, Stephan; Pnevmatikakis, Eftychios; Murthy, Mala
- Abstract:
- Sensory pathways are typically studied starting at receptor neurons and following postsynaptic neurons into the brain. However, this leads to a bias in analysis of activity towards the earliest layers of processing. Here, we present new methods for volumetric neural imaging with precise across-brain registration, to characterize auditory activity throughout the entire central brain of Drosophila and make comparisons across trials, individuals, and sexes. We discover that auditory activity is present in most central brain regions and in neurons responsive to other modalities. Auditory responses are temporally diverse, but the majority of activity is tuned to courtship song features. Auditory responses are stereotyped across trials and animals in early mechanosensory regions, becoming more variable at higher layers of the putative pathway, and this variability is largely independent of spontaneous movements. This study highlights the power of using an unbiased, brain-wide approach for mapping the functional organization of sensory activity.
- Type:
- Dataset
- Issue Date:
- October 2020
105. Deep convolutional neural networks for multi-scale time-series classification and application to disruption prediction in fusion devices
- Author(s):
- Churchill, R.M; the DIII-D team
- Abstract:
- The multi-scale, mutli-physics nature of fusion plasmas makes predicting plasma events challenging. Recent advances in deep convolutional neural network architectures (CNN) utilizing dilated convolutions enable accurate predictions on sequences which have long-range, multi-scale characteristics, such as the time-series generated by diagnostic instruments observing fusion plasmas. Here we apply this neural network architecture to the popular problem of disruption prediction in fusion tokamaks, utilizing raw data from a single diagnostic, the Electron Cyclotron Emission imaging (ECEi) diagnostic from the DIII-D tokamak. ECEi measures a fundamental plasma quantity (electron temperature) with high temporal resolution over the entire plasma discharge, making it sensitive to a number of potential pre-disruptions markers with different temporal and spatial scales. Promising, initial disruption prediction results are obtained training a deep CNN with large receptive field ({$\sim$}30k), achieving an $F_1$-score of {$\sim$}91\% on individual time-slices using only the ECEi data.
- Type:
- Dataset
- Issue Date:
- October 2019
106. Distinct cytoskeletal proteins define zones of enhanced cell wall synthesis in Helicobacter pylori
- Author(s):
- Taylor, Jenny A.; Bratton, Benjamin P.; Sichel, Sophie R.; Blair, Kris M.; Jacobs, Holly M.; DeMeester, Kristen E.; Kuru, Erkin; Gray, Joe; Biboy, Jacob; VanNieuwenhze, Michael S.; Vollmer, Waldemar; Grimes, Catherine L.; Shaevitz, Joshua W.; Salama, Nina R.
- Abstract:
- Helical cell shape is necessary for efficient stomach colonization by Helicobacter pylori, but the molecular mechanisms for generating helical shape remain unclear. We show that the helical centerline pitch and radius of wild-type H. pylori cells dictate surface curvatures of considerably higher positive and negative Gaussian curvatures than those present in straight- or curved-rod bacteria. Quantitative 3D microscopy analysis of short pulses with either N-acetylmuramic acid or D-alanine metabolic probes showed that cell wall growth is enhanced at both sidewall curvature extremes. Immunofluorescence revealed MreB is most abundant at negative Gaussian curvature, while the bactofilin CcmA is most abundant at positive Gaussian curvature. Strains expressing CcmA variants with altered polymerization properties lose helical shape and associated positive Gaussian curvatures. We thus propose a model where CcmA and MreB promote PG synthesis at positive and negative Gaussian curvatures, respectively, and that this patterning is one mechanism necessary for maintaining helical shape.
- Type:
- Dataset and Image
- Issue Date:
- April 2019
107. Enhanced Pedestal H-mode at low edge ion collisionality on NSTX
- Author(s):
- Battaglia, D.J.; Guttenfelder, W.; Bell, R.E.; Diallo, A.; Ferraro, N.;, Fredrickson, E.; Gerhardt, S.P.; Kaye, S.M.; Maingi, R.; Smith, D.R.
- Abstract:
- The Enhanced Pedestal (EP) H-mode regime is an attractive wide-pedestal ELM-free high-betap scenario for NSTX-U and next-step devices as it achieves enhanced energy confinement (H98y,2 > 1.5), large normalized pressure (betaN > 5) and significant bootstrap fraction (f_BS > 0.6) at I_p/B_T = 2 MA/T. This regime is realized when the edge ion collisionality becomes sufficiently small that a positive feedback interaction occurs between a reduction in the ion neoclassical energy transport and an increase in the particle transport from pressure-driven edge instabilities. EP H-mode was most often observed as a transition following a large ELM in conditions with low edge neutral recycling. It is hypothesized that the onset of pressure-driven instabilities prior to the full recovery of the neutral density leads to a temporary period with elevated ion temperature gradient that triggers the transition to EP H-mode. Linear CGYRO and M3D-C1 calculations are compared to beam emission spectroscopy (BES) and magnetic spectroscopy in order to describe the evolution of the edge particle transport mechanisms during the ELM recovery and the saturated EP H-mode state. The observations are consistent with the hypothesis that the onset of pressure-driven edge instabilities, such as the KBM and kink-peeling, can be responsible for the increased particle transport in EP H-mode.
- Type:
- Dataset
- Issue Date:
- June 2020
108. Femtosecond X-ray Diffraction of Laser-shocked Forsterite (Mg2SiO4) to 122 GPa
- Author(s):
- Kim, Donghoon; Tracy, Sally J.; Smith, Raymond F.; Gleason, Arianna E.; Bolme, Cindy A.; Prakapenka, Vitali B.; Appel, Karen; Speziable, Sergio; Wicks, June K.; Berryman, Eleanor J.; Han, Sirus K.; Schoelmerich, Markus O.; Lee, Hae Ja; Nagler, Bob; Cunningham, Eric F.; Akin, Minta C.; Asimow, Paul D.; Eggert, Jon H.; Duffy, Thomas S.
- Abstract:
- The behavior of forsterite, Mg2SiO4, under dynamic compression is of fundamental importance for understanding its phase transformations and high-pressure behavior. Here, we have carried out an in situ X-ray diffraction study of laser-shocked poly- and single-crystal forsterite (a-, b-, and c- orientations) from 19 to 122 GPa using the Matter in Extreme Conditions end-station of the Linac Coherent Light Source. Under laser-based shock loading, forsterite does not transform to the high-pressure equilibrium assemblage of MgSiO3 bridgmanite and MgO periclase, as was suggested previously. Instead, we observe forsterite and forsterite III, a metastable polymorph of Mg2SiO4, coexisting in a mixed-phase region from 33 to 75 GPa for both polycrystalline and single-crystal samples. Densities inferred from X-ray diffraction data are consistent with earlier gas-gun shock data. At higher stress, the behavior observed is sample-dependent. Polycrystalline samples undergo amorphization above 79 GPa. For [010]- and [001]-oriented crystals, a mixture of crystalline and amorphous material is observed to 108 GPa, whereas the [100]-oriented crystal adopts an unknown crystal structure at 122 GPa. The Q values of the first two sharp diffraction peaks of amorphous Mg2SiO4 show a similar trend with compression as those observed for MgSiO3 glass in both recent static and laser-compression experiments. Upon release to ambient pressure, all samples retain or revert to forsterite with evidence for amorphous material also present in some cases. This study demonstrates the utility of femtosecond free-electron laser X-ray sources for probing the time evolution of high-pressure silicates through the nanosecond-scale events of shock compression and release.
- Type:
- Dataset
- Issue Date:
- November 2020
109. First impurity powder injection experiments in LHD
- Author(s):
- Nespoli F., Ashikawa N., Gilson E.P., Lunsford R., Masuzaki S., Shoji M., Oishi T., Suzuki C., Nagy A., Mollen A., Pablant N.A., Ida K., Yoshinuma M., Tamura N., Gates D.A., Morisaki T., and the LHD experiment group
- Abstract:
- Injection of impurities in the form of sub-millimeter powder grains is performed for the first time in the Large Helical Device (LHD) plasma, employing the Impurity Powder Dropper (IPD) [A. Nagy et al., RSI 2018], developed and built by PPPL. Controlled amounts of boron (B) and boron nitride (BN) powder are injected into the helical plasma. Visible camera imaging, UV and charge exchange spectroscopy measurements show that the injected impurities effectively penetrate into the plasma in two different magnetic configurations.The prompt effects of the impurities on the plasma are characterized as the injection rate is scanned. The injected impurities provide a supplemental electron source, causing the plasma density to increase, together with the radiated power. Beneficial effects on the confined plasma temperature are observed at low plasma densities, due to an increased efficiency in NBI power absorption. For $n_{e,av}<10^{19}m^{-3}$ the powder grains penetrate deeper into the plasma, as they can be less effectively deflected by the plasma flow in the divertor leg, which they have to cross first as they are injected from the top of the machine.In this case, the created B ions are observed to move outwards from UV spectroscopy and charge exchange measurements, due to the outwards direction of the radial electric field. This makes low density plasmas a better candidate for powder boronization techniques.
- Type:
- Dataset
- Issue Date:
- November 2020
110. Geometric concepts for stellarator permanent magnet arrays
- Author(s):
- Hammond, K. C.; Zhu, C.; Brown, T.; Corrigan, K.; Gates, D. A.; Sibilia, M.
- Abstract:
- The development of stellarators that use permanent magnet arrays to shape their confining magnetic fields has been a topic of recent interest, but the requirements for how such magnets must be shaped, manufactured, and assembled remain to be determined. To address these open questions, we have performed a study of geometric concepts for magnet arrays with the aid of the newly developed MAGPIE code. A proposed experiment similar to the National Compact Stellarator Experiment (NCSX) is used as a test case. Two classes of magnet geometry are explored: curved bricks that conform to a regular grid in cylindrical coordinates, and hexahedra that conform to the toroidal plasma geometry. In addition, we test constraints on the magnet polarization. While magnet configurations constrained to be polarized normally to a toroidal surface around the plasma are unable to meet the required magnetic field parameters when subject to physical limitations on the strength of present-day magnets, configurations with unconstrained polarizations are shown to satisfy the physics requirements for a targeted plasma.
- Type:
- Dataset
- Issue Date:
- July 2020
111. Gyrokinetic understanding of the edge pedestal transport driven by resonant magnetic perturbations in a realistic divertor geometry
- Author(s):
- Hager, R.; Chang, C. S.; Ferraro, N. M.; Nazikian R.
- Abstract:
- Self-consistent simulations of neoclassical and electrostatic turbulent transport in a DIII-D H-mode edge plasma under resonant magnetic perturbations (RMPs) have been performed using the global total-f gyrokinetic particle-in-cell code XGC, in order to study density-pump out and electron heat confinement.The RMP field is imported from the extended magneto-hydrodynamics (MHD) code M3D-C1, taking into account the linear two-fluid plasma response.With both neoclassical and turbulence physics considered together, the XGC simulation reproduces two key features of experimentally observed edge transport under RMPs: increased radial particle transport in the pedestal region that is sufficient to account for the experimental pump-out rate, and suppression of the electron heat flux in the steepest part of the edge pedestal.In the simulation, the density fluctuation amplitude of modes moving in the electron diamagnetic direction increases due to interaction with RMPs in the pedestal shoulder and outward, while the electron temperature fluctuation amplitude decreases.
- Type:
- Dataset
- Issue Date:
- June 2020
112. MHD-blob correlations in NSTX
- Author(s):
- Zweben SJ; Fredrickson ED; Myra JR; Podesta M; Scotti F
- Abstract:
- This paper describes a study of the cross-correlations between edge fluctuations as seen in the gas puff imaging (GPI) diagnostic and low frequency coherent magnetic fluctuations (MHD) in H-mode plasmas in NSTX. The main new result was that large blobs in the SOL were significantly correlated with MHD activity the 3-6 kHz range in 21 of the 223 shots examined. There were also many other shots in which fluctuations in the GPI signal level and its peak radius Rpeak were correlated with MHD activity, but without any significant correlation of the MHD with large blobs. The structure and motion of the MHD is compared with that of the correlated blobs, and some possible theoretical mechanisms for the MHD-blob correlation are discussed.
- Type:
- Dataset
- Issue Date:
- May 2020
113. Machine Learning Characterization of Alfvénic and Sub-Alfvénic Chirping and Correlation With Fast-Ion Loss at NSTX
- Author(s):
- Woods, B. J. Q.; Duarte, V. N.; Fredrickson, E. D.; Gorelenkov, N. N.; Podestà, M.; Vann, R. G. L.
- Abstract:
- Abrupt large events in the Alfvenic and sub-Alfvenic frequency bands in tokamaks are typically correlated with increased fast-ion loss. Here, machine learning is used to speed up the laborious process of characterizing the behavior of magnetic perturbations from corresponding frequency spectrograms that are typically identified by humans. The analysis allows for comparison between different mode character (such as quiescent, fixed frequency, and chirping, avalanching) and plasma parameters obtained from the TRANSP code, such as the ratio of the neutral beam injection (NBI) velocity and the Alfven velocity (v_inj./v_A), the q-profile, and the ratio of the neutral beam beta and the total plasma beta (beta_beam,i / beta). In agreement with the previous work by Fredrickson et al., we find a correlation between beta_beam,i and mode character. In addition, previously unknown correlations are found between moments of the spectrograms and mode character. Character transition from quiescent to nonquiescent behavior for magnetic fluctuations in the 50200-kHz frequency band is observed along the boundary v_phi ~ (1/4)(v_inj. - 3v_A), where v_phi is the rotation velocity.
- Type:
- Dataset
- Issue Date:
- December 2019
114. March Mathness: Effects of basketball on the brain
- Author(s):
- Antony, James; McDougle, Sam
- Abstract:
- Surprise signals a discrepancy between past and current beliefs. It is theorized to be linked to affective experiences, the creation of particularly resilient memories, and segmentation of the flow of experience into discrete perceived events. However, the ability to precisely measure naturalistic surprise has remained elusive. We used advanced basketball analytics to derive a quantitative measure of surprise and characterized its behavioral, physiological, and neural correlates in human subjects observing basketball games. We found that surprise was associated with segmentation of ongoing experiences, as reflected by subjectively perceived event boundaries and shifts in neocortical patterns underlying belief states. Interestingly, these effects differed by whether surprising moments contradicted or bolstered current predominant beliefs. Surprise also positively correlated with pupil dilation, activation in subcortical regions associated with dopamine, game enjoyment, and long-term memory. These investigations support key predictions from event segmentation theory and extend theoretical conceptualizations of surprise to real-world contexts.
- Type:
- Dataset
- Issue Date:
- 2020
115. Modeling of resistive plasma response in toroidal geometry using an asymptotic matching approach
- Author(s):
- Z. R. Wang; A. H. Glasser; D. Brennan; Y. Q. Liu; J-K. Park
- Abstract:
- The method of solving linear resistive plasma response, based on the asymptotic matching approach, is developed for full toroidal tokamaks by upgrading the Resistive DCON code [A.H. Glasser, Z.R. Wang and J.-K. Park, Physics of Plasmas, \textbf{23}, 112506 (2016)]. The derived matching matrix, asymptotically matching the outer and inner regions, indicates that the applied three dimension (3-D) magnetic perturbations contribute additional small solutions at each resonant surface due to the toroidal coupling of poloidal modes. In contrast, the resonant harmonic only affects the corresponding resonant surface in the cylindrical plasma. Since the solution of ideal outer region is critical to the asymptotic matching and is challenging to be solved in the toroidal geometry due to the singular power series solution at the resonant surfaces, systematic verification of the outer region $\Delta^\prime$ matrix is made by reproducing the well known analytical $\Delta^{\prime}$ result in [H.P. Furth, P.H. Rutherford and H. Selberg, The Physics of Fluids, \textbf{16}, 1054-1063 (1073)] as well as by making a quantitative benchmark with the PEST3 code [A. Pletzer and R.L. Dewar, J. Plasma Physics, \textbf{45}, 427-451 (1991)]. Finally, the reconstructed numerical solution of resistive plasma response from the toroidal matching matrix is presented. Comparing with the ideal plasma response, the global structure of the response can be affected by the small finite island at the resonant surfaces.
- Type:
- Dataset
- Issue Date:
- October 2020
116. Simulating pitch angle scattering using an explicitly solvable energy-conserving algorithm
- Author(s):
- Zhang, Xin; Fu, Yichen; Qin, Hong
- Abstract:
- Particle distribution functions evolving under the Lorentz operator can be simulated with the Langevin equation for pitch angle scattering. This approach is frequently used in particle based Monte-Carlo simulations of plasma collisions, among others. However, most numerical treatments do not guarantee energy conservation, which may lead to unphysical artifacts such as numerical heating and spectra distortions. We present a novel structure-preserving numerical algorithm for the Langevin equation for pitch angle scattering. Similar to the well-known Boris algorithm, the proposed numerical scheme takes advantage of the structure-preserving properties of the Cayley transform when calculating the velocity-space rotations. The resulting algorithm is explicitly solvable, while preserving the norm of velocities down to machine precision. We demonstrate that the method has the same order of numerical convergence as the traditional stochastic Euler-Maruyama method.
- Type:
- Dataset
- Issue Date:
- September 2020
117. Solitary zonal structures in subcritical drift waves: a minimum model
- Author(s):
- Yao Zhou; Hongxuan Zhu; I. Y. Dodin
- Abstract:
- {\rtf1\ansi\ansicpg1252\cocoartf1561\cocoasubrtf610{\fonttbl\f0\fswiss\fcharset0 Helvetica;}{\colortbl;\red255\green255\blue255;\red0\green0\blue0;}{\*\expandedcolortbl;;\cssrgb\c0\c0\c0;}\margl1440\margr1440\vieww10800\viewh8400\viewkind0\pard\tx887\tx1775\tx2662\tx3550\tx4438\tx5325\tx6213\tx7101\tx7988\tx8876\tx9764\tx10651\tx11539\tx12427\tx13314\tx14202\tx15090\tx15977\tx16865\tx17753\tx18640\tx19528\tx20416\tx21303\tx22191\tx23079\tx23966\tx24854\tx25742\tx26629\tx27517\tx28405\tx29292\tx30180\tx31067\tx31955\tx32843\tx33730\tx34618\tx35506\tx36393\tx37281\tx38169\tx39056\tx39944\tx40832\tx41719\tx42607\tx43495\tx44382\tx45270\tx46158\tx47045\tx47933\tx48821\tx49708\tx50596\tx51484\tx52371\tx53259\tx54147\tx55034\tx55922\tx56810\tx57697\tx58585\tx59472\tx60360\tx61248\tx62135\tx63023\tx63911\tx64798\tx65686\tx66574\tx67461\tx68349\tx69237\tx70124\tx71012\tx71900\tx72787\tx73675\tx74563\tx75450\tx76338\tx77226\tx78113\tx79001\tx79889\tx80776\tx81664\tx82552\tx83439\tx84327\tx85215\tx86102\tx86990\tx87877\tx88765\slleading20\pardirnatural\partightenfactor0\f0\fs38 \cf2 Solitary zonal structures have recently been identified in gyrokinetic simulations of subcritical drift-wave (DW) turbulence with background shear flows. However, the nature of these structures has not been fully understood yet. Here, we show that similar structures can be obtained within a reduced model, which complements the modified Hasegawa\'97Mima equation with a generic primary instability and a background shear flow. We also find that these structures can be qualitatively reproduced in the modified Hasegawa\'97Wakatani equation, which subsumes the reduced model as a limit. In particular, we illustrate that in both cases, the solitary zonal structures approximately satisfy the same \'93equation of state\'94, which is a local relation connecting the DW envelope with the zonal-flow velocity. Due to this generality, our reduced model can be considered as a minimum model for solitary zonal structures in subcritical DWs. }
- Type:
- Dataset
- Issue Date:
- March 2020
118. Statistical properties of magnetic structures and energy dissipation during turbulent reconnection in the Earth's magnetotail
- Author(s):
- Bergstedt, K.; Ji, H.; Jara-Almonte, J.; Yoo, J.; Ergun, R. E.; Chen, L.-J.
- Abstract:
- We present the first statistical study of magnetic structures and associated energy dissipation observed during a single period of turbulent magnetic reconnection, by using the in situ measurements of the Magnetospheric Multiscale mission in the Earth's magnetotail on 26 July 2017. The structures are selected by identifying a bipolar signature in the magnetic field and categorized as plasmoids or current sheets via an automated algorithm which examines current density and plasma flow. The size of the plasmoids forms a decaying exponential distribution ranging from subelectron up to ion scales. The presence of substantial number of current sheets is consistent with a physical picture of dynamic production and merging of plasmoids during turbulent reconnection. The magnetic structures are locations of significant energy dissipation via electric field parallel to the local magnetic field, while dissipation via perpendicular electric field dominates outside of the structures. Significant energy also returns from particles to fields.
- Type:
- Dataset
- Issue Date:
- 14 September 2020
119. Theory of the tertiary instability and the Dimits shift from reduced drift-wave models
- Author(s):
- Zhu, Hongxuan; Zhou, Yao; Dodin, I. Y.
- Abstract:
- Tertiary modes in electrostatic drift-wave turbulence are localized near extrema of the zonal velocity $U(x)$ with respect to the radial coordinate $x$. We argue that these modes can be described as quantum harmonic oscillators with complex frequencies, so their spectrum can be readily calculated. The corresponding growth rate $\gamma_{\rm TI}$ is derived within the modified Hasegawa--Wakatani model. We show that $\gamma_{\rm TI}$ equals the primary-instability growth rate plus a term that depends on the local $U''$; hence, the instability threshold is shifted compared to that in homogeneous turbulence. This provides a generic explanation of the well-known yet elusive Dimits shift, which we find explicitly in the Terry--Horton limit. Linearly unstable tertiary modes either saturate due to the evolution of the zonal density or generate radially propagating structures when the shear $|U'|$ is sufficiently weakened by viscosity. The Dimits regime ends when such structures are generated continuously.
- Type:
- Dataset
- Issue Date:
- January 2020
120. Theory of the tertiary instability and the Dimits shift within a scalar model
- Author(s):
- Zhu, Hongxuan; Zhou Yao; Dodin, I.Y.
- Abstract:
- The Dimits shift is the shift between the threshold of the drift-wave primary instability and the actual onset of turbulent transport in magnetized plasma. It is generally attributed to the suppression of turbulence by zonal flows, but developing a more detailed understanding calls for consideration of specific reduced models. The modified Terry--Horton system has been proposed by St-Onge [J. Plasma Phys. {\bf 83}, 905830504 (2017)] as a minimal model capturing the Dimits shift. Here, we use this model to develop an analytic theory of the Dimits shift and a related theory of the tertiary instability of zonal flows. We show that tertiary modes are localized near extrema of the zonal velocity $U(x)$, where $x$ is the radial coordinate. By approximating $U(x)$ with a parabola, we derive the tertiary-instability growth rate using two different methods and show that the tertiary instability is essentially the primary drift-wave instability modified by the local $U''$. Then, depending on $U''$, the tertiary instability can be suppressed or unleashed. The former corresponds to the case when zonal flows are strong enough to suppress turbulence (Dimits regime), while the latter corresponds to the case when zonal flows are unstable and turbulence develops. This understanding is different from the traditional paradigm that turbulence is controlled by the flow shear $U'$. Our analytic predictions are in agreement with direct numerical simulations of the modified Terry--Horton system.
- Type:
- Dataset
- Issue Date:
- June 2020
121. Toward fusion plasma scenario planning for NSTX-U using machine-learning-accelerated models
- Author(s):
- Mark D. Boyer
- Abstract:
- One of the most promising devices for realizing power production through nuclear fusion is the tokamak. To maximize performance, it is preferable that tokamak reactors achieve advanced operating scenarios characterized by good plasma confinement, improved magnetohydrodynamic (MHD) stability, and a largely non-inductively driven plasma current. Such scenarios could enable steady-state reactor operation with high \emph{fusion gain} --- the ratio of produced fusion power to the external power provided through the plasma boundary. Precise and robust control of the evolution of the plasma boundary shape as well as the spatial distribution of the plasma current, density, temperature, and rotation will be essential to achieving and maintaining such scenarios. The complexity of the evolution of tokamak plasmas, arising due to nonlinearities and coupling between various parameters, motivates the use of model-based control algorithms that can account for the system dynamics. In this work, a learning-based accelerated model trained on data from the National Spherical Torus Experiment Upgrade (NSTX-U) is employed to develop planning and control strategies for regulating the density and temperature profile evolution around desired trajectories. The proposed model combines empirical scaling laws developed across multiple devices with neural networks trained on empirical data from NSTX-U and a database of first-principles-based computationally intensive simulations. The reduced execution time of the accelerated model will enable practical application of optimization algorithms and reinforcement learning approaches for scenario planning and control development. An initial demonstration of applying optimization approaches to the learning-based model is presented, including a strategy for mitigating the effect of leaving the finite validity range of the accelerated model. The approach shows promise for actuator planning between experiments and in real-time.
- Type:
- Dataset
- Issue Date:
- May 2020
122. Vertical forces during VDEs in an ITER plasma and the role of halo currents
- Author(s):
- Clasuer, C; Jardin, S; Ferraro, N
- Abstract:
- Vertical displacement events (VDEs) can occur in elongated tokamaks causing large currents to flow in the vessel and other adjacent metallic structures. To better understand the potential magnitude of the associated forces and the role of the so called ``halo currents'' on them, we have used the M3D-C1 code to simulate potential VDEs in ITER. We used actual values for the vessel resistivity and pre-quench temperatures and, unlike most of the previous studies, the halo region is naturally formed by triggering the thermal quench with an increase in the plasma thermal conductivity. We used the 2D non-linear version of the code and vary the post-thermal quench thermal conductivity profile as well as the boundary temperature in order to generate a wide range of possible cases that could occur in the experiment. We also show that, for a similar condition, increasing the halo current does not increase the total force on the wall since it is offset by a decrease in the toroidal contribution.
- Type:
- Dataset
- Issue Date:
- February 2020
123. Visual Analogy Extrapolation Challenge (VAEC)
- Author(s):
- Webb, Taylor; Dulberg, Zachary; Frankland, Steven; Petrov, Alexander; O'Reilly, Randall; Cohen, Jonathan
- Abstract:
- Extrapolation -- the ability to make inferences that go beyond the scope of one's experiences -- is a hallmark of human intelligence. By contrast, the generalization exhibited by contemporary neural network algorithms is largely limited to interpolation between data points in their training corpora. In this paper, we consider the challenge of learning representations that support extrapolation. We introduce a novel visual analogy benchmark that allows the graded evaluation of extrapolation as a function of distance from the convex domain defined by the training data. We also introduce a simple technique, context normalization, that encourages representations that emphasize the relations between objects. We find that this technique enables a significant improvement in the ability to extrapolate, considerably outperforming a number of competitive techniques.
- Type:
- Dataset and Image
- Issue Date:
- 2020
124. A scalable real-time framework for Thomson scattering analysis: Application to NSTX-U
- Author(s):
- F. M. Laggner, A. Diallo, B. P. LeBlanc, R. Rozenblat, G. Tchilinguirian, E.Kolemen, the NSTX-U team
- Abstract:
- A detailed description of a prototype setup for real-time (rt) Thomson scattering (TS) analysis is presented and implemented in the multi-point Thomson scattering (MPTS) diagnostic system at the National Spherical Torus Experiment Upgrade(NSTX-U). The data acquisition hardware was upgraded with rt capable electronics (rt-analog digital converters (ADCs) and a rt server) that allow for fast digitization of the laser pulse signal of eight radial MPTS channels. In addition, a new TS spectrum analysis software for a rapid calculation of electron temperature (Te) and electron density (ne) was developed. Testing of the rt hardware and data analysis soft-ware was successfully completed and benchmarked against the standard, post-shot evaluation. Timing tests were performed showing that the end-to-end processing time was reproducibly below 17 ms for the duration of at least 5 s, meeting a 60 Hz deadline by the laser pulse repetition rate over the length of a NSTX-U discharge. The presented rt framework is designed to be scalable in system size, i.e. incorporation of additional radial channels by solely adding additional rt capable hardware. Furthermore, it is scalable in its operation duration and was continuously run for up to 30 min, making it an attractive solution for machines with long discharge duration such as advanced, non-inductive tokamaks or stellarators.
- Type:
- Dataset
- Issue Date:
- March 2019
125. Application of transient CHI plasma startup to future ST and AT devices
- Author(s):
- Hammond, K.C.; Raman, R.; Jardin, S.C.
- Abstract:
- Employment of non-inductive plasma start-up techniques would considerably simplify the design of a spherical tokamak fusion reactor. Transient coaxial helicity injection (CHI) is a promising method, expected to scale favorably to next-step reactors. However, the implications of reactor-relevant parameters on the initial breakdown phase for CHI have not yet been considered. Here, we evaluate CHI breakdown in reactor-like configurations using an extension of the Townsend avalanche theory. We find that a CHI electrode concept in which the outer vessel wall is biased to achieve breakdown, while previously successful on NSTX and HIT-II, may exhibit a severe weakness when scaled up to a reactor. On the other hand, concepts which employ localized biasing electrodes such as those used in QUEST would avoid this issue. Assuming that breakdown can be successfully attained, we then apply scaling relationships to predict plasma parameters attainable in the transient CHI discharge. Assuming the use of 1 Wb of injector flux, we find that plasma currents of 1 MA should be achievable. Furthermore, these plasmas are expected to Ohmically self-heat with more than 1 MW of power as they decay, facilitating efficient hand-off to steady-state heating sources. These optimistic scalings are supported by TSC simulations.
- Type:
- Dataset
- Issue Date:
- February 2019
126. Blob wakes in NSTX
- Author(s):
- Zweben SJ, Myra JR, Diallo A, Russell DA, Scotti F, Stotler DP
- Abstract:
- Transient small-scale structures were identified in the wake of blobs movingpoloidally through the SOL of high-powered H-mode plasmas in NSTX, using the gaspuff imaging (GPI) diagnostic. These blob wakes had a poloidal wavelength in therange 3.5 cm, which is significantly smaller than the average blob scale of~12 cm, and the wakes had a poloidal velocity of 1.5 km/sec in theelectron diamagnetic direction, which is opposite to the blob poloidal velocity inthese shots. These wakes were radially localized 0-4 cm outside the separatrix andoccurred within ~50 microsec after the passage of a blob through the GPI field of view.The clearest wakes were seen when the GPI viewing angle was well aligned with thelocal B field line, as expected for such small-scale structures given the diagnosticgeometry. A plausible theoretical interpretation of the wakes is discussed: theobserved wakes share some features of drift waves and/or drift-Alfven waves whichcould be excited
- Type:
- Dataset
- Issue Date:
- July 2019
127. CKavity Library: Next-Generation Sequencing
- Abstract:
- Protein sequence space is vast; nature uses only an infinitesimal fraction of possible sequences to sustain life. Are there solutions to biological problems other than those provided by nature? Can we create artificial proteins that sustain life? To investigate this question, the Hecht lab has created combinatorial collections, or libraries, of novel sequences with no homology to those found in living organisms. These libraries were subjected to screens and selections, leading to the identification of sequences with roles in catalysis, modulating gene regulation, and metal homeostasis. However, the resulting functional proteins formed dynamic rather than well-ordered structures. This impeded structural characterization and made it difficult to ascertain a mechanism of action. To address this, Christina Karas's thesis work focuses on developing a new model of libraries based on the de novo protein S-824, a four-helix bundle with a very stable three-dimensional structure. The first part of this research focused on mutagenesis of S-824 and characterization of the resulting proteins, revealing that this scaffold tolerates amino acid substitutions, including buried polar residues and the removal of hydrophobic side chains to create a putative cavity. Distinct from previous libraries, Karas targeted variability to a specific region of the protein, seeking to create a cavity and potential active site. The second part of this work details the design and creation of a library encoding 1.7 x 10^6 unique proteins, assembled from degenerate oligonucleotides. The third and fourth parts of this work cover the screening effort for a range of activities, both in vitro and in vivo. I found that this collection binds heme readily, leading to abundant peroxidase activity. Hits for lipase and phosphatase activity were also detected. This work details the development of a new strategy for creating de novo sequences geared toward function rather than structure.
- Type:
- Dataset
128. Climate Impacts from Large Volcanic Eruptions in a High-resolution Climate Model: the Importance of Forcing Structure
- Author(s):
- Yang, Wenchang; Vecchi, Gabriel; Fueglistaler, Stephan; Horowitz, Larry; Luet, David; Muñoz, Ángel; Paynter, David; Underwood, Seth
- Abstract:
- Explosive volcanic eruptions have large climate impacts, and can serve as observable tests of the climatic response to radiative forcing. Using a high resolution climate model, we contrast the climate responses to Pinatubo, with symmetric forcing, and those to Santa Maria and Agung, which had meridionally asymmetric forcing. Although Pinatubo had larger global-mean forcing, asymmetric forcing strongly shifts the latitude of tropical rainfall features, leading to larger local precipitation/TC changes. For example, North Atlantic TC activity over is enhanced/reduced by SH-forcing (Agung)/NH-forcing (Santa Maria), but changes little in response to the Pinatubo forcing. Moreover, the transient climate sensitivity estimated from the response to Santa Maria is 20% larger than that from Pinatubo or Agung. This spread in climatic impacts of volcanoes needs to be considered when evaluating the role of volcanoes in global and regional climate, and serves to contextualize the well-observed response to Pinatubo.
- Type:
- Dataset
- Issue Date:
- 2019
129. Comment on ‘Numerical modeling of tokamak breakdown phase driven by pure Ohmic heating under ideal conditions’
- Author(s):
- Yoo, Min-Gu; Na, Yong-Su
- Abstract:
- In this comment, we point out possible critical numerical flaws of recent particle simulation studies (Jiang et al 2016 Nucl. Fusion 56 126017, Peng et al 2018 Nucl. Fusion 58 026007) on the electrical gas breakdown in a simple one-dimensional periodic slab geometry. We show that their observations on the effects of the ambipolar electric fields during the breakdown, such as the sudden reversal of the ion flow direction, could not be real physical phenomena but resulting from numerical artifacts violating the momentum conservation law. We show that an incomplete implementation of the direct-implicit scheme can cause the artificial electric fields and plasma transports resulting in fallacies in simulation results. We also discuss that their simple plasma model without considering poloidal magnetic fields seriously mislead the physical mechanism of the electrical gas breakdown because it cannot reflect important dominant plasma dynamics in the poloidal plane (Yoo et al 2018 Nat. Commun. 9 3523).
- Type:
- Dataset
- Issue Date:
- June 2019
130. Competitive learning modulates memory consolidation during sleep
- Author(s):
- Antony, James W.; Cheng, Larry Y.; Brooks, Paula P.; Paller, Ken A.; Norman, Kenneth A.
- Abstract:
- Competition between memories can cause weakening of those memories. Here we investigated memory competition during sleep in human participants by presenting auditory cues that had been linked to two distinct picture-location pairs during wake. We manipulated competition during learning by requiring participants to rehearse picture-location pairs associated with the same sound either competitively (choosing to rehearse one over the other, leading to greater competition) or separately; we hypothesized that greater competition during learning would lead to greater competition when memories were cued during sleep. With separate-pair learning, we found that cueing benefited spatial retention. With competitive-pair learning, no benefit of cueing was observed on retention, but cueing impaired retention of well-learned pairs (where we expected strong competition). During sleep, post-cue beta power (16–30 Hz) indexed competition and predicted forgetting, whereas sigma power (11–16 Hz) predicted subsequent retention. Taken together, these findings show that competition between memories during learning can modulate how they are consolidated during sleep.
- Type:
- Dataset
- Issue Date:
- November 2018
131. Design and simulation of the snowflake divertor control for NSTX-U
- Author(s):
- Vail, P. J.; Boyer, M. D.; Welander, A. S.; Kolemen, E.; U.S. Department of Energy contract number DE-AC02-09CH11466
- Abstract:
- This paper presents the development of a physics-based multiple-input-multiple-output algorithm for real-time feedback control of snowflake divertor (SFD) configurations on the National Spherical Torus eXperiment Upgrade (NSTX-U). A model of the SFD configuration response to applied voltages on the divertor control coils is first derived and then used, in conjunction with multivariable control synthesis techniques, to design an optimal state feedback controller for the configuration. To demonstrate the capabilities of the controller, a nonlinear simulator for axisymmetric shape control was developed for NSTX-U which simultaneously evolves the currents in poloidal field coils based upon a set of feedback-computed voltage commands, calculates the induced currents in passive conducting structures, and updates the plasma equilibrium by solving the free-boundary Grad-Shafranov problem. Closed-loop simulations demonstrate that the algorithm enables controlled operations in a variety of SFD configurations and provides capabilities for accurate tracking of time-dependent target trajectories for the divertor geometry. In particular, simulation results suggest that a time-varying controller which can properly account for the evolving SFD dynamical response is not only desirable but necessary for achieving acceptable control performance. The algorithm presented in this paper has been implemented in the NSTX-U Plasma Control System in preparation for future control and divertor physics experiments.
- Type:
- Dataset
- Issue Date:
- April 2019
132. Electron inertial effects on linearly polarized electromagnetic ion cyclotron waves at Earth's magnetosphere
- Author(s):
- Kim, Eun-Hwa; Johnson, Jay; Lee, Dong-Hun
- Abstract:
- We discuss a role of the electron inertial effect on linearly polarized electromagnetic ion cyclotron (EMIC) waves at Earth. The linearly polarized EMIC waves have been previously suggested to be generated via mode conversion from the fast compressional wave at the ion-ion hybrid (IIH) resonance. When the electron inertial effects are neglected, the wave normal angle of the mode-converted IIH waves is 90 degrees because the wavevector perpendicular to the magnetic field becomes infinite at the IIH resonance. When the electron inertial effect is considered, the mode-converted IIH waves can propagate across the magnetic field lines and the wavelength perpendicular to the magnetic field approaches the electron inertial length scale near the Buchsbaum resonance. These waves are referred to as electron inertial waves. Due to the electron inertial effect, the perpendicular wavenumber to the ambient magnetic field near the IIH resonance remains finite and the wave normal angle is less than 90 degrees. The wave normal angle where the maximum absorption occurs in a dipole magnetic field is 30-80 degrees, which is consistent with the observed values near the magnetic equator. Therefore, the numerical results suggest that the linearly polarized EMIC wave generated via mode conversion near the IIH resonance can be detected in between the Buchsbaum and the IIH resonance frequencies, and these waves can have normal angle less than 90 degrees.
- Type:
- Dataset
- Issue Date:
- April 2019
133. Elemental and topographical imaging of microscopic variations in deposition on NSTX-U and DIII-D samples2
- Author(s):
- C.H. Skinner, C.P. Chrobak, R. Kaita, B.E.Koel
- Abstract:
- Abstract: Tokamak plasma facing components have surface roughness that can cause microscopic spatial variations in erosion and deposition and hence influence material migration, erosion lifetime, dust and tritium accumulation, and plasma contamination. However high spatial resolution measurements of deposition on the scale of the surface roughness have been lacking to date. We will present elemental images of graphite samples from NSTX-U and DIII-D DiMES experiments performed with a Scanning Auger Microprobe at sub-micron resolution that show strong microscopic variations in deposition and correlate this with 3D topographical maps of surface irregularities. The NSTX-U samples were boronized and exposed to deuterium plasmas and the DiMES samples had localized Al and W films and were exposed to dedicated helium plasmas. Topographical maps of the samples were performed with a 3D confocal optical microscope and compared to the elemental deposition pattern. The results revealed localized deposition concentrated in areas shadowed from the ion flux, incident in a direction calculated (for the DiMES case) by taking account of the magnetic pre-sheath.
- Type:
- Dataset
- Issue Date:
- April 2019
134. Formation of solitary zonal structures via the modulational instability of drift waves
- Author(s):
- Zhou, Yao; Zhu, Hongxuan; Dodin, I. Y.
- Abstract:
- {\rtf1\ansi\ansicpg1252\cocoartf1561\cocoasubrtf600 {\fonttbl\f0\fswiss\fcharset0 Helvetica;} {\colortbl;\red255\green255\blue255;\red0\green0\blue0;} {\*\expandedcolortbl;;\cssrgb\c0\c0\c0;} \margl1440\margr1440\vieww10800\viewh8400\viewkind0 \pard\tx887\tx1775\tx2662\tx3550\tx4438\tx5325\tx6213\tx7101\tx7988\tx8876\tx9764\tx10651\tx11539\tx12427\tx13314\tx14202\tx15090\tx15977\tx16865\tx17753\tx18640\tx19528\tx20416\tx21303\tx22191\tx23079\tx23966\tx24854\tx25742\tx26629\tx27517\tx28405\tx29292\tx30180\tx31067\tx31955\tx32843\tx33730\tx34618\tx35506\tx36393\tx37281\tx38169\tx39056\tx39944\tx40832\tx41719\tx42607\tx43495\tx44382\tx45270\tx46158\tx47045\tx47933\tx48821\tx49708\tx50596\tx51484\tx52371\tx53259\tx54147\tx55034\tx55922\tx56810\tx57697\tx58585\tx59472\tx60360\tx61248\tx62135\tx63023\tx63911\tx64798\tx65686\tx66574\tx67461\tx68349\tx69237\tx70124\tx71012\tx71900\tx72787\tx73675\tx74563\tx75450\tx76338\tx77226\tx78113\tx79001\tx79889\tx80776\tx81664\tx82552\tx83439\tx84327\tx85215\tx86102\tx86990\tx87877\tx88765\slleading20\pardirnatural\partightenfactor0 \f0\fs38 \cf2 The dynamics of the radial envelope of a weak coherent drift wave is approximately governed by a nonlinear Schr\'f6dinger equation, which emerges as a limit of the modified Hasegawa\'97Mima equation. The nonlinear Schr\'f6dinger equation has well-known soliton solutions, and its modulational instability can naturally generate solitary structures. In this paper, we demonstrate that this simple model can adequately describe the formation of solitary zonal structures in the modified Hasegawa\'97Mima equation, but only when the amplitude of the coherent drift wave is relatively small. At larger amplitudes, the modulational instability produces stationary zonal structures instead. Furthermore, we find that incoherent drift waves with beam-like spectra can also be modulationally unstable to the formation of solitary or stationary zonal structures, depending on the beam intensity. Notably, we show that these drift waves can be modeled as quantumlike particles (\'93driftons\'94) within a recently developed phase-space (Wigner\'97Moyal) formulation, which intuitively depicts the solitary zonal structures as quasi-monochromatic drifton condensates. Quantumlike effects, such as diffraction, are essential to these condensates; hence, the latter cannot be described by wave-kinetic models that are based on the ray approximation.\ }
- Type:
- Dataset
- Issue Date:
- June 2019
135. Global modeling of wall material migration following boronization in NSTX-U
- Author(s):
- Nichols, J.H.; Jaworski, M.A.; Skinner, C.H.; Bedoya, F.; Scotti, F.; Soukhanovskii, V.A.; Schmid, K.
- Abstract:
- Boronization is commonly utilized in tokamaks to suppress intrinsic impurities, most notably oxygen from residual water vapor. However, this is a temporary solution, as oxygen levels typically return to pre-boronization levels following repeated plasma exposure. The global impurity migration model WallDYN has been applied to the post-boronization surface impurity evolution in NSTX-U. A “Thin Film Model” has been incorporated into WallDYN to handle spatially inhomogeneous conditioning films of varying thicknesses, together with an empirical boron conditioning model for the NSTX-U glow discharge boronization process. The model qualitatively reproduces the spatial distribution of boron in the NSTX-U vessel, the spatially-resolved divertor emission pattern, and the increase in oxygen levels following boronization. The simulations suggest that oxygen is primarily sourced from wall locations without heavy plasma flux or significant boron deposition, namely the lower and upper passive plates and the lower private flux zone.
- Type:
- Dataset
- Issue Date:
- March 2019
136. Initial transport and turbulence analysis and gyrokinetic simulation validation in NSTX-U L-mode plasmas
- Author(s):
- Guttenfelder, W.; Kaye, S.M.; Kreite, D.M.; Bell, R.E.; Diallo, A.; LeBlanc, B.P.; McKee, G.R.; Podesta, M.; Sabbagh, S.A.; Smith, D.R.
- Abstract:
- Transport analysis, ion-scale turbulence measurements, and initial linear and nonlinear gyrokinetic simulations are reported for a transport validation study based on low aspect ratio NSTX-U L-mode discharges. The relatively long, stationary L-modes enabled by the upgraded centerstack provide a more ideal target for transport validation studies that were not available during NSTX operation. Transport analysis shows that anomalous electron transport dominates energy loss while ion thermal transport is well described by neoclassical theory. Linear gyrokinetic GYRO analysis predicts that ion temperature gradient (ITG) modes are unstable around normalized radii $\rho$=0.6-0.8, although $E\timesB$ shearing rates are larger than the linear growth rates over much of that region. Deeper in the core ($\rho$=0.4-0.6), electromagnetic microtearing modes (MTM) are unstable as a consequence of the relatively high beta and collisionality in these particular discharges. Consistent with the linear analysis, local, nonlinear ion-scale GYRO simulations predict strong ITG transport at $\rho$=0.76, whereas electromagnetic MTM transport is important at $\rho$=0.47. The prediction of ion-scale turbulence is consistent with 2D beam emission spectroscopy (BES) that measures the presence of broadband ion-scale fluctuations. Interestingly, the BES measurements also indicate the presence of bi-modal poloidal phase velocity propagation that could be indicative of two different turbulence types. However, in the region between ($\rho$=0.56, 0.66), ion-scale simulations are strongly suppressed by the locally large $E\timesB$ shear. Instead, electron temperature gradient (ETG) turbulence simulations predict substantial transport, illustrating electron-scale contributions can be important in low aspect ratio L-modes, similar to recent analysis at conventional aspect ratio. However, agreement within experimental uncertainties has not been demonstrated, which requires additional simulations to test parametric sensitivities. The potential need to include profile-variation effects (due to the relatively large value of $\rho_*$=$\rho_i$/a at low aspect ratio), including electromagnetic and possibly multi-scale effects, is also discussed.
- Type:
- Dataset
- Issue Date:
- March 2019
137. Intrinsic Rotation in Axisymmetric Devices
- Author(s):
- T Stoltzfus-Dueck
- Abstract:
- Toroidal rotation is critical for fusion in tokamaks, since it stabilizes instabilities that can otherwise cause disruptions or degrade confinement. Unlike present-day devices, ITER might not have enough neutral-beam torque to easily avoid these instabilities. We must therefore understand how the plasma rotates intrinsically, that is, without applied torque. Experimentally, torque-free plasmas indeed rotate, with profiles that are often non-flat and even non-monotonic. The rotation depends on many plasma parameters including collisionality and plasma current, and exhibits sudden bifurcations (rotation reversals) at critical parameter values.Since toroidal angular momentum is conserved in axisymmetric systems, and since experimentally inferred momentum transport is much too large to be neoclassical, theoretical work has focused on rotation drive by nondiffusive turbulent momentum fluxes. In the edge, intrinsic rotation relaxes to a steady state in which the total momentum outflux from the plasma vanishes. Ion drift orbits, scrape-off-layer flows, separatrix geometry, and turbulence intensity gradient all play a role. In the core, nondiffusive and viscous momentum fluxes balance to set the rotation gradient at each flux surface. Although many mechanisms have been proposed for the nondiffusive fluxes, most are treated in one of two distinct but related gyrokinetic formulations. In a radially local fluxtube, appropriate for rho star <<1, the lowest-order gyrokinetic formulations exhibit a symmetry that prohibits nondiffusive momentum flux for nonrotating plasmas in an up- down symmetric magnetic geometry with no ExB shear. Many symmetry-breaking mechanisms have been identified, but none have yet been conclusively demonstrated to drive a strong enough flux to explain commonly observed experimental rotation profiles. Radially global gyrokinetic simulations naturally include many symmetry-breaking mechanisms, and have shown cases with experimentally relevant levels of nondiffusive flux. These promising early results motivate further work to analyze, verify, and validate.This article provides a pedagogical introduction to intrinsic rotation in axisymmetric devices. Intended for both newcomers to the topic and experienced practitioners, the article reviews a broad range of topics including experimental and theoretical results for both edge and core rotation, while maintaining a focus on the underlying concepts.
- Type:
- Dataset
- Issue Date:
- November 2019
138. Machine Learning Characterization of Alfvénic and Sub-Alfvénic Chirping and Correlation With Fast-Ion Loss at NSTX
- Author(s):
- Woods, B. J. Q.; Duarte, V. N.; Fredrickson, E. D.; Gorelenkov, N. N.; Podestà, M.; Vann, R. G. L.
- Abstract:
- Abrupt large events in the Alfvenic and sub-Alfvenic frequency bands in tokamaks are typically correlated with increased fast-ion loss. Here, machine learning is used to speed up the laborious process of characterizing the behavior of magnetic perturbations from corresponding frequency spectrograms that are typically identified by humans. The analysis allows for comparison between different mode character (such as quiescent, fixed frequency, and chirping, avalanching) and plasma parameters obtained from the TRANSP code, such as the ratio of the neutral beam injection (NBI) velocity and the Alfven velocity (v_inj./v_A), the q-profile, and the ratio of the neutral beam beta and the total plasma beta (beta_beam,i / beta). In agreement with the previous work by Fredrickson et al., we find a correlation between beta_beam,i and mode character. In addition, previously unknown correlations are found between moments of the spectrograms and mode character. Character transition from quiescent to nonquiescent behavior for magnetic fluctuations in the 50200-kHz frequency band is observed along the boundary v_phi ~ (1/4)(v_inj. - 3v_A), where v_phi is the rotation velocity.
- Type:
- Dataset
- Issue Date:
- December 2019
139. Modelling of Ablatant Deposition from Electromagnetically Driven Radiative Pellets for Disruption Mitigation Studies
- Author(s):
- Lunsford, Robert; Raman, Roger; Brooks, Arthur; Ellis, Robert A.; Lay, W-S;
- Abstract:
- The Electromagnetic Particle Injector (EPI) concept is advanced through the simulation of ablatant deposition into ITER H-mode discharges with calculations showing penetration past the H-mode pedestal for a range of injection velocities and granule sizes concurrent with the requirements of disruption mitigation. As discharge stored energy increases in future fusion devices such as ITER, control and handling of disruption events becomes a critical issue. An unmitigated disruption could lead to failure of the plasma facing components resulting in financially and politically costly repairs. Methods to facilitate the quench of an unstable high current discharge are required. With the onset warning time for some ITER disruption events estimated to be less than 10 ms, a disruption mitigation system needs to be considered which operates at injection speeds greater than gaseous sound speeds. Such an actuator could then serve as a means to augment presently planned pneumatic injection systems. The EPI uses a rail gun concept whereby a radiative payload is delivered into the discharge by means of the JxB forces generated by an external current pulse, allowing for injection velocities in excess of 1 km/s. The present status of the EPI project is outlined, including the addition of boost magnetic coils. These coils augment the self-generated rail gun magnetic field and thus provide a more efficient acceleration of the payload. The coils and the holder designed to constrain them have been modelled with the ANSYS code to ensure structural integrity through the range of operational coil cu
- Type:
- Dataset
- Issue Date:
- June 2019
140. Nonlinear saturation and oscillations of collisionless zonal flows
- Author(s):
- Zhu, Hongxuan; Zhou, Yao; Dodin, I. Y.
- Abstract:
- In homogeneous drift-wave (DW) turbulence, zonal flows (ZFs) can be generated via a modulational instability (MI) that either saturates monotonically or leads to oscillations of the ZF energy at the nonlinear stage. This dynamics is often attributed as the predator-prey oscillations induced by ZF collisional damping; however, similar dynamics is also observed in collisionless ZFs, in which case a different mechanism must be involved. Here, we propose a semi-analytic theory that explains the transition between the oscillations and saturation of collisionless ZFs within the quasilinear Hasegawa-Mima model. By analyzing phase-space trajectories of DW quanta (driftons) within the geometrical-optics (GO) approximation, we argue that the parameter that controls this transition is N ~ \gamma_MI/\omega_DW, where \gamma_MI is the MI growth rate and \omega_DW is the linear DW frequency. We argue that at N << 1, ZFs oscillate due to the presence of so-called passing drifton trajectories, and we derive an approximate formula for the ZF amplitude as a function of time in this regime. We also show that at N >~ 1, the passing trajectories vanish and ZFs saturate monotonically, which can be attributed to phase mixing of higher-order sidebands. A modification of N that accounts for effects beyond the GO limit is also proposed. These analytic results are tested against both quasilinear and fully-nonlinear simulations. They also explain the earlier numerical results by Connaughton et al. [J. Fluid Mech. 654, 207 (2010)] and Gallagher et al. [Phys. Plasmas 19, 122115 (2012)] and offer a revised perspective on what the control parameter is that determines the transition from the oscillations to saturation of collisionless ZFs.
- Type:
- Dataset
- Issue Date:
- May 2019
141. Physics design for a lithium vapor box divertor experiment on Magnum-PSI
- Author(s):
- Schwartz, Jacob; Emdee, Eric; Goldston, Robert; Jaworski, Michael
- Abstract:
- The lithium vapor box divertor is a potential solution for power exhaust in toroidal confinement devices. The divertor plasma interacts with a localized, dense cloud of lithium vapor, leading to volumetric radiation, cooling, recombination, and detachment. To minimize contamination of the core plasma, lithium vapor is condensed on cool (300°C to 400°C) baffles upstream of the detachment point. Before implementing this in a toroidal plasma device with a slot divertor geometry, we consider an experiment with a scaled baffled-pipe geometry in the high-power linear plasma device Magnum-PSI. Three 15 cm-scale open cylinders joined by 6 cm diameter ‘nozzles’ are positioned on the plasma beam axis upstream of a target. The central box may be loaded with several tens of grams of lithium, which can be evaporated at 650°C to produce a vapor predicted, using a simple plasma-neutral interaction model, to be dense enough to cause volumetric detachment in the plasma. The power delivered to the target and box walls as measured by increases in their temperatures after a 10 s plasma pulse can be compared to determine the effectiveness of the vapor in detaching the plasma. Direct Simulation Monte Carlo simulations are performed to estimate the flow rates of lithium vapor between the boxes and to estimate the trapping of H2 delivered by the plasma in the boxes, which could inadvertently lead to detachment. Details of the geometry, simulations, and possible diagnostic techniques are presented.
- Type:
- Dataset
- Issue Date:
- 30 January 2019
142. Quasioptical modeling of wave beams with and without mode conversion: II. Numerical simulations of single-mode beams
- Author(s):
- K. Yanagihara, I. Y. Dodin, and S. Kubo
- Abstract:
- This work continues a series of papers where we propose an algorithm for quasioptical modeling of electromagnetic beams with and without mode conversion. The general theory was reported in the first paper of this series, where a parabolic partial differential equation was derived for the field envelope that may contain one or multiple modes with close group velocities. Here, we present a corresponding code PARADE (PAraxial RAy DEscription) and its test applications to single-mode beams in vacuum and also in inhomogeneous magnetized plasma. The numerical results are compared, respectively, with analytic formulas from Gaussian-beam optics and also with cold-plasma ray tracing. Quasioptical simulations of mode-converting beams are reported in the next, third paper of this series.
- Type:
- Dataset
- Issue Date:
- August 2019
143. Quasioptical modeling of wave beams with and without mode conversion: III. Numerical simulations of mode-converting beams
- Author(s):
- K. Yanagihara, I. Y. Dodin, and S. Kubo
- Abstract:
- This work continues a series of papers where we propose an algorithm for quasioptical modeling of electromagnetic beams with and without mode conversion. The general theory was reported in the first paper of this series, where a parabolic partial differential equation was derived for the field envelope that may contain one or multiple modes with close group velocities. In the second paper, we presented a corresponding code PARADE (PAraxial RAy DEscription) and its test applications to single-mode beams. Here, we report quasioptical simulations of mode-converting beams for the first time. We also demonstrate that PARADE can model splitting of two-mode beams. The numerical results produced by PARADE show good agreement with those of one-dimensional full-wave simulations and also with conventional ray tracing (to the extent that one-dimensional and ray-tracing simulations are applicable).
- Type:
- Dataset
- Issue Date:
- August 2019
144. Real-time capable modeling of neutral beam injection on NSTX-U using neural networks
- Author(s):
- Boyer, M.D.; Kaye, S.; Erickson, K.
- Abstract:
- A new model of heating, current drive, torque and other effects of neutral beam injection on NSTX-U that uses neural networks has been developed. The model has been trained and tested on the results of the Monte Carlo code NUBEAM for the database of experimental discharges taken during the first operational campaign of NSTX-U. By projecting flux surface quantities onto empirically derived basis functions, the model is able to efficiently and accurately reproduce the behavior of both scalars, like the total neutron rate and shine through, and profiles, like beam current drive and heating. The model has been tested on the NSTX-U real-time computer, demonstrating a rapid execution time orders of magnitude faster than the Monte Carlo code that is well suited for the iterative calculations needed to interpret experimental results, optimization during scenario development activities, and real-time plasma control applications. Simulation results of a proposed design for a nonlinear observer that embeds the neural network calculations to estimate the poloidal flux profile evolution, as well as effective charge and fast ion diffusivity, are presented.
- Type:
- Dataset
- Issue Date:
- February 2019
145. Reduced Model for Direct Induction Startup Scenario Development on MAST-U and NSTX-U
- Author(s):
- Battaglia, D.J.; Thornton, A.J.; Gerhardt, S.P.; Kirk, A.; Kogan, L; Menard, J.E.
- Abstract:
- A reduced semi-empirical model using time-dependent axisymmetric vacuum field calculations is used to develop the prefill and feed-forward coil current targets required for reliable direct induction (DI) startup on the new MA-class spherical tokamaks, MAST-U and NSTX-U. The calculations are constrained by operational limits unique to each device, such as the geometry of the conductive elements and active coils, power supply specifications and coil heating and stress limits. The calculations are also constrained by semi-empirical models for sufficient breakdown, current drive, equilibrium and stability of the plasma developed from a shared database. A large database of DI startup on NSTX and NSTX-U is leveraged to quantify the requirements for achieving a reliable breakdown (Ip ~ 20 kA). It is observed that without pre-ionization, STs access the large E/P regime at modest loop voltage (Vloop) where the electrons in the weakly ionized plasma are continually accelerating along the open field lines. This ensures a rapid (order millisecond) breakdown of the neutral gas, even without pre-ionization or high-quality field nulls. The timescale of the initial increase in Ip on NSTX is reproduced in the reduced model provided a mechanism for impeding the applied electric field is included. Most discharges that fail in the startup phase are due to an inconsistency in the evolution of the plasma current (Ip) and equilibrium field or loss of vertical stability during the burn-through phase. The requirements for the self-consistent evolution of the fields in the weakly and full-ionized plasma states are derived from demonstrated DI startup on NSTX, NSTX-U and MAST. The predictive calculations completed for MAST-U and NSTX-U illustrate that the maximum Ip ramp rate (dIp/dt) in the early startup phase is limited by the voltage limits on the poloidal field coils on MAST-U and passive vertical stability on NSTX-U.
- Type:
- Dataset
- Issue Date:
- August 2019
146. Sleep spindle refractoriness segregates periods of memory reactivation
- Author(s):
- Antony, James W.; Piloto, Luis; Wang, Margaret; Brooks, Paula P.; Norman, Kenneth A.; Paller, Ken A.
- Abstract:
- The stability of long-term memories is enhanced by reactivation during sleep. Correlative evidence has linked memory reactivation with thalamocortical sleep spindles, although their functional role is not fully understood. Our initial study replicated this correlation and also demonstrated a novel rhythmicity to spindles, such that a spindle is more likely to occur approximately 3–6 s following a prior spindle. We leveraged this rhythmicity to test the role of spindles in memory by using real-time spindle tracking to present cues within versus just after the presumptive refractory period; as predicted, cues presented just after the refractory period led to better memory. Our findings demonstrate a precise temporal link between sleep spindles and memory reactivation. Moreover, they reveal a previously undescribed neural mechanism whereby spindles may segment sleep into two distinct substates: prime opportunities for reactivation and gaps that segregate reactivation events.
- Type:
- Dataset
- Issue Date:
- 4 June 2018
147. Sound velocities in shock-synthesized stishovite to 72 GPa
- Author(s):
- Berryman, Eleanor J.; Winey, J. M.; Gupta, Yogendra M.; Duffy, Thomas S.
- Abstract:
- Stishovite (rutile-type SiO2) is the archetype of dense silicates and may occur in post-garnet eclogitic rocks at lower-mantle conditions. Sound velocities in stishovite are fundamental to understanding its mechanical and thermodynamic behavior at high pressure and temperature. Here, we use plate-impact experiments combined with velocity interferometry to determine the stress, density, and longitudinal sound speed in stishovite formed during shock compression of fused silica at 44 GPa and above. The measured sound speeds range from 12.3(8) km/s at 43.8(8) GPa to 9.8(4) km/s at 72.7(11) GPa. The decrease observed at 64 GPa reacts a decrease in the shear modulus of stishovite, likely due to the onset of melting. By 72 GPa, the measured sound speed agrees with the theoretical bulk sound speed indicating loss of all shear stiffness due to complete melting. Our sound velocity results provide direct evidence for shock-induced melting, in agreement with previous pyrometry data.
- Type:
- Dataset
- Issue Date:
- 2019
148. Spontaneous multi-keV electron generation in a low-RF-power axisymmetric mirror machine
- Author(s):
- Swanson, C.;Cohen, S.A.
- Abstract:
- Title: Spontaneous multi-keV electron generation in a low-RF-power axisymmetric mirror machine Abstract: X-ray emission shows the existence of multi-keV electrons in low-temperature, low-power, capacitively-coupled RF-heated magnetic-mirror plasmas that also contain a warm (300 eV) minority electron population. Though these warm electrons are initially passing particles, we suggest that collisionless scattering -- mu non-conservation in the static vacuum field -- is responsible for a minority of them to persist in the mirror cell for thousands of transits during which time a fraction are energized to a characteristic temperature of 3 keV, with some electrons reaching energies above 30 keV. A heuristic model of the heating by a Fermi-acceleration-like mechanism is presented, with mu non-conservation in the static vacuum field as an essential feature.
- Type:
- Dataset
- Issue Date:
- May 2019
149. Study of liquid metal surface wave damping in the presence of magnetic fields and electrical currents
- Author(s):
- Fisher, A.E.; Hvasta, M.G.; Kolemen, E.
- Abstract:
- Experiments and predictions of surface wave damping in liquid metal due to a surface aligned magnetic field and externally regulated j × B force are presented. Fast-flowing, liquid-metal plasma facing components (LM-PFCs) are a proposed alternative to solid PFCs that are unable to handle the high heat flux, thermal stresses, and radiation damage in a tokamak. The significant technical challenges associated with LM-PFCs compared to solid PFCs are justified by greater heat flux management, self-healing properties, and reduced particle recycling. However, undesirable engineering challenges such as evaporation and splashing of the liquid metal introduce excessive impurities into the plasma and degrade plasma performance. Evaporation may be avoided through high-speed flow that limits temperature rise of the liquid metal by reducing heat flux exposure time, but as flow speed increases the surface may become more turbulent and prone to splashing and uneven surfaces. Wave damping is one mechanism that reduces surface disturbance and thus the chances of liquid metal impurity introduction into the plasma. Experiments on the Liquid Metal eXperiment Upgrade (LMX-U) examined damping under the influence of transverse magnetic fields and vertically directed Lorentz force.
- Type:
- Dataset
- Issue Date:
- March 2019
150. Study of the impact of pre- and real-time deposition of lithium on plasma performance on NSTX
- Author(s):
- Canal, G.P.; Maingi, R.; Evans, T.E.; Kaye, S.M.; Mansfield, D.K.
- Abstract:
- The efficiency of two lithium (Li) injection methods used on the National Spherical Torus Experiment (NSTX) are compared in terms of the amount of Li used to produce equivalent plasma performance improvements, namely Li evaporation over the divertor plates, prior to the initiation of the discharge, and real-time Li injection directly into the plasma scrape-off layer during the discharge. The measurements show that the real-time method can affect the energy confinement and edge stability of NSTX plasmas in a more efficient way than the Li evaporation method as it requires only a fraction of the amount of Li used by the evaporation method to produce similar improvements.
- Type:
- Dataset
- Issue Date:
- January 2019
