Search

Start Over Domain Natural Sciences

61. Inversion technique to obtain local ion temperature profiles for an axisymmetric plasma with toroidal and radial velocities

Author(s):
Bell, Ronald E.
Abstract:
A matrix inversion technique is derived to calculate local ion temperature from line-integrated measurements of an extended emission source in an axisymmetric plasma which exactly corrects for both toroidal velocity and radial velocity components. Local emissivity and toroidal velocity can be directly recovered from line-integrated spectroscopic measurements, but an independent measurement of the radial velocity is necessary to complete the temperature inversion. The extension of this technique to handle the radial velocity is relevant for magnetic reconnection and merging compression devices where temperature inversion from spectroscopic measurements is desired. A simulation demonstrates the effects of radial velocity on the determination of ion temperature.
Type:
Dataset
Issue Date:
February 2021

62. Density perturbation mode structure of high frequency compressional and global Alfvén eigenmodes in the National Spherical Torus Experiment using a novel reflectometer analysis technique

Author(s):
Crocker, N.A.; Kubota, S.; Peebles, W.A.; Rhodes, T.L.; Fredrickson, E.D.; Belova, E.; Diallo, A.; LeBlanc, B.P.; Sabbagh, S.A.
Abstract:
Reflectometry measurements of compressional (CAE) and global (GAE) Alfvén eigenmodes are analyzed to obtain the amplitude and spatial structure of the density perturbations associated with the modes. A novel analysis technique developed for this purpose is presented. The analysis also naturally yields the amplitude and spatial structure of the density contour radial displacement, which is found to be 2–4 times larger than the value estimated directly from the reflectometer measurements using the much simpler ‘mirror approximation’. The modes were driven by beam ions in a high power (6 MW) neutral beam heated H-mode discharge (#141398) in the National Spherical Torus Experiment. The results of the analysis are used to assess the contribution of the modes to core energy transport and ion heating. The total displacement amplitude of the modes, which is shown to be larger than previously estimated (Crocker et al 2013 Nucl. Fusion 53 43017), is compared to the predicted threshold (Gorelenkov et al 2010 Nucl. Fusion 50 84012) for the anomalously high heat diffusion inferred from transport modeling in similar NSTX discharges. The results of the analysis also have strong implications for the energy transport via coupling of CAEs to kinetic Alfvén waves seen in simulations with the Hybrid MHD code (Belova et al 2015 Phys. Rev. Lett. 115 15001). Finally, the amplitudes of the observed CAEs fall well below the threshold for causing significant ion heating by stochastic velocity space diffusion (Gates et al 2001 Phys. Rev. Lett. 87 205003).
Type:
Dataset
Issue Date:
November 2017

63. Analytic stability boundaries for compressional and global Alfven eigenmodes driven by fast ions. II. Interaction via Landau resonance.

Author(s):
Lestz, J.B.; Gorelenkov, N.N.; Belova, E.V.; Tang, S.X.; Crocker, N.A.
Abstract:
Conditions for net fast ion drive are derived for beam-driven, co-propagating, sub-cyclotron compressional (CAE) and global (GAE) Alfven eigenmodes driven by the Landau resonance with super-Alfvenic fast ions. Approximations applicable to realistic neutral beam distributions and mode characteristics observed in spherical tokamaks enable the derivation of marginal stability conditions for these modes. Such conditions successfully reproduce the stability boundaries found from numerical integration of the exact expression for local fast ion drive/damping. Coupling between the CAE and GAE branches of the dispersion due to finite \omega/\omega_{ci} and k_\parallel/k_\perp is retained and found to be responsible for the existence of the GAE instability via this resonance. Encouraging agreement is demonstrated between the approximate stability criterion, simulation results, and a database of NSTX observations of co-CAEs.
Type:
Dataset
Issue Date:
January 2020

64. Energetic-particle-modified global Alfven eigenmodes

Author(s):
Lestz, J.B.; Belova, E.V.; Gorelenkov, N.N.
Abstract:
Fully self-consistent hybrid MHD/particle simulations reveal strong energetic particle modifications to sub-cyclotron global Alfven eigenmodes (GAE) in low-aspect ratio, NSTX-like conditions. Key parameters defining the fast ion distribution function -- the normalized injection velocity v_0/v_A and central pitch -- are varied in order to study their influence on the characteristics of the excited modes. It is found that the frequency of the most unstable mode changes significantly and continuously with beam parameters, in accordance with the Doppler-shifted cyclotron resonances which drive the modes, and depending most substantially on v_0/v_A. This unexpected result is present for both counter-propagating GAEs, which are routinely excited in NSTX, and high frequency co-GAEs, which have not been previously studied. Large changes in frequency without clear corresponding changes in mode structure could indicate the existence of a new energetic particle mode, referred to here as an energetic-particle-modified GAE (EP-GAE). Additional simulations conducted for a fixed MHD equilibrium demonstrate that the GAE frequency shift cannot be explained by the equilibrium changes due to energetic particle effects.
Type:
Dataset
Issue Date:
December 2017

65. Hybrid simulations of sub-cyclotron compressional and global Alfven Eigenmode stability in spherical tokamaks

Author(s):
Lestz, J.B.; Belova, E.V.; Gorelenkov, N.N
Abstract:
A comprehensive numerical study has been conducted in order to investigate the stability of beam-driven, sub-cyclotron frequency compressional (CAE) and global (GAE) Alfven Eigenmodes in low aspect ratio plasmas for a wide range of beam parameters. The presence of CAEs and GAEs has previously been linked to anomalous electron temperature profile flattening at high beam power in NSTX experiments, prompting further examination of the conditions for their excitation. Linear simulations are performed with the hybrid MHD-kinetic initial value code HYM in order to capture the general Doppler-shifted cyclotron resonance that drives the modes. Three distinct types of modes are found in simulations -- co-CAEs, cntr-GAEs, and co-GAEs -- with differing spectral and stability properties. The simulations reveal that unstable GAEs are more ubiquitous than unstable CAEs, consistent with experimental observations, as they are excited at lower beam energies and generally have larger growth rates. Local analytic theory is used to explain key features of the simulation results, including the preferential excitation of different modes based on beam injection geometry and the growth rate dependence on the beam injection velocity, critical velocity, and degree of velocity space anisotropy. The background damping rate is inferred from simulations and estimated analytically for relevant sources not present in the simulation model, indicating that co-CAEs are closer to marginal stability than modes driven by the cyclotron resonances.
Type:
Dataset
Issue Date:
March 2021

66. Nonlinear simulations of beam-driven Compressional Alfvén Eigenmodes in NSTX

Author(s):
Belova, E.V.; Gorelenkov, N.N.; Crocker, N.A.; Lestz, J.B.; Fredrickson, E.D.; Tang, S.; Tritz, K.
Abstract:
Results of 3D nonlinear simulations of neutral-beam-driven compressional Alfven eigenmodes (CAEs) in the National Spherical Torus Experiment (NSTX) are presented. Hybrid MHD-particle simulations for the H-mode NSTX discharge (shot 141398) using the HYM code show unstable CAE modes for a range of toroidal mode numbers, n=4-9, and frequencies below the ion cyclotron frequency. It is found that the essential feature of CAEs is their coupling to kinetic Alfven wave (KAW) that occurs on the high-field side at the Alfven resonance location. High-frequency Alfven eigenmodes are frequently observed in beam-heated NSTX plasmas, and have been linked to flattening of the electron temperature profiles at high beam power. Coupling between CAE and KAW suggests an energy channeling mechanism to explain these observations, in which beam-driven CAEs dissipate their energy at the resonance location, therefore significantly modifying the energy deposition profile. Nonlinear simulations demonstrate that CAEs can channel the energy of the beam ions from the injection region near the magnetic axis to the location of the resonant mode conversion at the edge of the beam density profile. A set of nonlinear simulations show that the CAE instability saturates due to nonlinear particle trapping, and a large fraction of beam energy can be transferred to several unstable CAEs of relatively large amplitudes and absorbed at the resonant location. Absorption rate shows a strong scaling with the beam power.
Type:
Dataset
Issue Date:
April 2017

68. Statistical properties of magnetic structures and energy dissipation during turbulent reconnection in the Earth's magnetotail

Author(s):
Bergstedt, K.; Ji, H.; Jara-Almonte, J.; Yoo, J.; Ergun, R. E.; Chen, L.-J.
Abstract:
We present the first statistical study of magnetic structures and associated energy dissipation observed during a single period of turbulent magnetic reconnection, by using the in situ measurements of the Magnetospheric Multiscale mission in the Earth's magnetotail on 26 July 2017. The structures are selected by identifying a bipolar signature in the magnetic field and categorized as plasmoids or current sheets via an automated algorithm which examines current density and plasma flow. The size of the plasmoids forms a decaying exponential distribution ranging from subelectron up to ion scales. The presence of substantial number of current sheets is consistent with a physical picture of dynamic production and merging of plasmoids during turbulent reconnection. The magnetic structures are locations of significant energy dissipation via electric field parallel to the local magnetic field, while dissipation via perpendicular electric field dominates outside of the structures. Significant energy also returns from particles to fields.
Type:
Dataset
Issue Date:
14 September 2020

69. Application of Benchmarked Kinetic Resistive Wall Mode Stability Codes to ITER, Including Additional Physics

Author(s):
Berkery, J.W.; Wang, Z.R.; Sabbagh, S.A.; Liu, Y.Q.; Betti, R.; Guazotto, L.
Abstract:
Leading resistive wall mode (RWM) stability codes MARS-K [Y. Liu, et al., Phys. Plasmas 15, 112503 (2008)] and MISK [B. Hu, et al., Phys. Plasmas 12, 057301 (2005)] have been previously benchmarked. The benchmarking has now been extended to include additional physics, and used to project the stability of ITER in a realistic operating space. Due to ITER's relatively low plasma rotation and collisionality, collisions and non-resonance rotational effects were both found to have little impact on stability, and these non-resonance rotational effects also will not self-consistently affect the ITER RWM eigenfunction. Resonances between thermal ions and electrons and the expected level of ITER toroidal rotation were found to be important to stability, as were alpha particles, which are not in rotational resonance. MISK calculations show that without alpha particles, ITER is projected to be unstable to the RWM, but the expected level of alphas is calculated to provide a sufficient level of stability.
Type:
Dataset
Issue Date:
October 2017

70. Spike Trains of Retinal Ganglion Cells Viewing a Repeated Natural Movie

Author(s):
Berry II, Michael J.
Abstract:
This archive contains spike trains simultaneously recorded from ganglion cells in the tiger salamander retina with a multi-electrode array while viewing a repeated natural movie clip. These data have been analyzed in previous papers, notably Puchalla et al. Neuron 2005 and Schneidman et al. Nature 2006.
Type:
Dataset
Issue Date:
8 March 2022

71. The Structured `Low Temperature' Phase of the Retinal Population Code

Author(s):
Ioffe, Mark Lev; Berry II, Michael J.
Abstract:
Recent advances in experimental techniques have allowed the simultaneous recordings of populations of hundreds of neurons, fostering a debate about the nature of the collective structure of population neural activity. Much of this debate has focused on the empirical findings of a phase transition in the parameter space of maximum entropy models describing the measured neural probability distributions, interpreting this phase transition to indicate a critical tuning of the neural code. Here, we instead focus on the possibility that this is a first-order phase transition which provides evidence that the real neural population is in a `structured', collective state. We show that this collective state is robust to changes in stimulus ensemble and adaptive state. We find that the pattern of pairwise correlations between neurons has a strength that is well within the strongly correlated regime and does not require fine tuning, suggesting that this state is generic for populations of 100+ neurons. We find a clear correspondence between the emergence of a phase transition, and the emergence of attractor-like structure in the inferred energy landscape. A collective state in the neural population, in which neural activity patterns naturally form clusters, provides a consistent interpretation for our results.
Type:
Dataset
Issue Date:
2017

74. Sound velocities in shock-synthesized stishovite to 72 GPa

Author(s):
Berryman, Eleanor J.; Winey, J. M.; Gupta, Yogendra M.; Duffy, Thomas S.
Abstract:
Stishovite (rutile-type SiO2) is the archetype of dense silicates and may occur in post-garnet eclogitic rocks at lower-mantle conditions. Sound velocities in stishovite are fundamental to understanding its mechanical and thermodynamic behavior at high pressure and temperature. Here, we use plate-impact experiments combined with velocity interferometry to determine the stress, density, and longitudinal sound speed in stishovite formed during shock compression of fused silica at 44 GPa and above. The measured sound speeds range from 12.3(8) km/s at 43.8(8) GPa to 9.8(4) km/s at 72.7(11) GPa. The decrease observed at 64 GPa reacts a decrease in the shear modulus of stishovite, likely due to the onset of melting. By 72 GPa, the measured sound speed agrees with the theoretical bulk sound speed indicating loss of all shear stiffness due to complete melting. Our sound velocity results provide direct evidence for shock-induced melting, in agreement with previous pyrometry data.
Type:
Dataset
Issue Date:
2019

75. Full-wave simulations of ICRF heating regimes in toroidal plasmas with non-Maxwellian distribution functions

Author(s):
Bertelli, N; Valeo, E.J.; Green, D.L.; Gorelenkova, M.; Phillips, C.K.; Podesta, M.; Lee, J.P.; Wright, J.C.; Jaeger, E.
Abstract:
At the power levels required for significant heating and current drive in magnetically-confined toroidal plasma, modification of the particle distribution function from a Maxwellian shape is likely [T. H. Stix, Nucl. Fusion, 15 737 (1975)], with consequent changes in wave propagation and in the location and amount of absorption. In order to study these effects computationally, both the finite-Larmor-radius and the high-harmonic fast wave (HHFW), versions of the full-wave, hot-plasma toroidal simulation code TORIC [M. Brambilla, Plasma Phys. Control. Fusion 41, 1 (1999) and M. Brambilla, Plasma Phys. Control. Fusion 44, 2423 (2002)], have been extended to allow the prescription of arbitrary velocity distributions of the form f(v||, v_perp, psi , theta). For hydrogen (H) minority heating of a deuterium (D) plasma with anisotropic Maxwellian H distributions, the fractional H absorption varies significantly with changes in parallel temperature but is essentially independent of perpendicular temperature. On the other hand, for HHFW regime with anisotropic Maxwellian fast ion distribution, the fractional beam ion absorption varies mainly with changes in the perpendicular temperature. The evaluation of the wave-field and power absorption, through the full wave solver, with the ion distribution function provided by either aMonte-Carlo particle and Fokker-Planck codes is also examined for Alcator C-Mod and NSTX plasmas. Non-Maxwellian effects generally tends to increase the absorption with respect to the equivalent Maxwellian distribution.
Type:
Dataset
Issue Date:
May 2017

76. Resonance in Fast-Wave Amplitude in the Periphery of Cylindrical Plasmas and Application to Edge Losses of Wave Heating Power in Tokamaks

Author(s):
Perkins, R.J.; Hosea, J.C.; Bertelli, N.; Taylor, G.; Wilson, J.R.
Abstract:
Heating magnetically confined plasmas using waves in the ion-cyclotron range of frequencies typically requires coupling these waves over a steep density gradient. This process has produced an unexpected and deleterious phenomenon on the National Spherical Torus eXperiment (NSTX): a prompt loss of wave power along magnetic field lines in front of the antenna to the divertor. Understanding this loss may be key to achieving effective heating and expanding the operational space of NSTX-Upgrade. Here, we propose that a new type of mode, which conducts a significant fraction of the total wave power in the low-density peripheral plasma, is driving these losses. We demonstrate the existence of such modes, which are distinct from surface modes and coaxial modes, in a cylindrical cold-plasma model when a half wavelength structure fits into the region outside the core plasma. The latter condition generalizes the previous hypothesis regarding the occurence of the edge losses and may explain why full-wave simulations predict these losses in some cases but not others. If valid, this condition implies that outer gap control is a potential strategy for mitigating the losses in NSTX-Upgrade in addition to raising the magnetic field or influencing the edge density.
Type:
Dataset
Issue Date:
July 2016

77. Two-dimensional full-wave simulations of waves in space and tokamak plasmas

Author(s):
Kim, E.-W.; Bertelli, N.; Johnson, J.R.; Valeo, E.; Hosea, J.; Perkins, R.
Abstract:
We illustrate the capabilities of a recently developed two-dimensional full wave code (FW2D) in space and tokamak plasmas by adopting various values of density, magnetic field configuration and strength as well as boundary shape. As example, we first showed fast compressional wave propagation in the inner magnetosphere is dramatically modified by a plasmaspheric plume at Earth's magnetosphere. The results show that wave energy is trapped in the plume showing a leaky eigenmode-like structure with plume, which is similar to the detected magnetosonic waves. We also performed simulations of high harmonic fast waves in the scrape-off layer (SOL) plasmas of the National Spherical Torus eXperiment (NSTX)/NSTX-Upgrade. Comparison the results with previous full-wave simulations show that although the FW2D code uses a cold plasma approximation, the electric field and the fraction of the power losses in the SOL plasmas show excellent consistency and agreement with the previous full wave simulations performed by the AORSA code.
Type:
Dataset
Issue Date:
October 2018

78. Distinct cytoskeletal proteins define zones of enhanced cell wall synthesis in Helicobacter pylori

Author(s):
Taylor, Jenny A.; Bratton, Benjamin P.; Sichel, Sophie R.; Blair, Kris M.; Jacobs, Holly M.; DeMeester, Kristen E.; Kuru, Erkin; Gray, Joe; Biboy, Jacob; VanNieuwenhze, Michael S.; Vollmer, Waldemar; Grimes, Catherine L.; Shaevitz, Joshua W.; Salama, Nina R.
Abstract:
Helical cell shape is necessary for efficient stomach colonization by Helicobacter pylori, but the molecular mechanisms for generating helical shape remain unclear. We show that the helical centerline pitch and radius of wild-type H. pylori cells dictate surface curvatures of considerably higher positive and negative Gaussian curvatures than those present in straight- or curved-rod bacteria. Quantitative 3D microscopy analysis of short pulses with either N-acetylmuramic acid or D-alanine metabolic probes showed that cell wall growth is enhanced at both sidewall curvature extremes. Immunofluorescence revealed MreB is most abundant at negative Gaussian curvature, while the bactofilin CcmA is most abundant at positive Gaussian curvature. Strains expressing CcmA variants with altered polymerization properties lose helical shape and associated positive Gaussian curvatures. We thus propose a model where CcmA and MreB promote PG synthesis at positive and negative Gaussian curvatures, respectively, and that this patterning is one mechanism necessary for maintaining helical shape.
Type:
Dataset and Image
Issue Date:
April 2019

79. Attention and awareness in the dorsal attention network

Author(s):
Wilterson, Andrew; Nastase, Samuel; Bio, Branden; Guterstam, Arvid; Graziano, Michael
Abstract:
The attention schema theory (AST) posits a specific relationship between subjective awareness and attention, in which awareness is the control model that the brain uses to aid in the endogenous control of attention. We proposed that the right temporoparietal junction (TPJ) is involved in that interaction between awareness and attention. In previous experiments, we developed a behavioral paradigm in human subjects to manipulate awareness and attention. The paradigm involved a visual cue that could be used to guide a shift of attention to a target stimulus. In task 1, subjects were aware of the visual cue, and their endogenous control mechanism was able to use the cue to help control attention. In task 2, subjects were unaware of the visual cue, and their endogenous control mechanism was no longer able to use it to control attention, even though the cue still had a measurable effect on other aspects of behavior. Here we tested the two tasks while scanning brain activity in human volunteers. We predicted that the right TPJ would be active in relation to the cue in task 1, but not in task 2. This prediction was confirmed. The right TPJ was active in relation to the cue in task 1; it was not measurably active in task 2; the difference was significant. In our interpretation, the right TPJ is involved in a complex interaction in which awareness aids in the control of attention.
Type:
Dataset
Issue Date:
2020

80. Integrative Mechanisms of Social Attention

Author(s):
Bio, Branden; Graziano, Michael
Abstract:
Monitoring the attention of others is fundamental to social cognition. Most of the literature on the topic assumes that our social cognitive machinery is tuned specifically to the gaze direction of others as a proxy for attention. This standard assumption reduces attention to an externally visible parameter. Here we show that this assumption is wrong and a deeper, more meaningful representation is involved. We presented subjects with two cues about the attentional state of a face: direction of gaze and emotional expression. We tested whether people relied predominantly on one cue, the other, or both. If the traditional view is correct, then the gaze cue should dominate. Instead, people employed a variety of strategies, some relying on gaze, some on expression, and some on an integration of cues. We also assessed people’s social cognitive ability using two, independent, standard tests. If the traditional view is correct, then social cognitive ability, as assessed by the independent tests, should correlate with the degree to which people successfully use the gaze cue to judge the attention state of the face. Instead, social cognitive ability correlated best with the degree to which people successfully integrated the cues together, instead of with the use of any one specific cue. The results suggest a rethink of a fundamental component of social cognition: monitoring the attention of others involves constructing a deep model that is informed by a combination of cues. Attention is a rich process and monitoring the attention of others involves a similarly rich representation.
Type:
Dataset
Issue Date:
22 July 2021