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1. Evolution patterns and parameter regimes in edge localized modes on the National Spherical Torus Experiment

Author(s):
Smith, D.R.; R.J. Fonck; G.R. McKee; A. Diallo; S.M. Kaye; B.P. LeBlanc; S.A. Sabbagh
Abstract:
We implement unsupervised machine learning techniques to identify characteristic evolution patterns and associated parameter regimes in edge localized mode (ELM) events observed on the National Spherical Torus Experiment. Multi-channel, localized measurements spanning the pedestal region capture the complex evolution patterns of ELM events on Alfven timescales. Some ELM events are active for less than 100~microsec, but others persist for up to 1~ms. Also, some ELM events exhibit a single dominant perturbation, but others are oscillatory. Clustering calculations with time-series similarity metrics indicate the ELM database contains at least two and possibly three groups of ELMs with similar evolution patterns. The identified ELM groups trigger similar stored energy loss, but the groups occupy distinct parameter regimes for ELM-relevant quantities like plasma current, triangularity, and pedestal height. Notably, the pedestal electron pressure gradient is not an effective parameter for distinguishing the ELM groups, but the ELM groups segregate in terms of electron density gradient and electron temperature gradient. The ELM evolution patterns and corresponding parameter regimes can shape the formulation or validation of nonlinear ELM models. Finally, the techniques and results demonstrate an application of unsupervised machine learning at a data-rich fusion facility.
Type:
Dataset
Issue Date:
September 2015

2. Midplane neutral density profiles in the National Spherical Torus Experiment

Author(s):
Stotler, D.; F. Scotti; R.E. Bell; A. Diallo; B.P. LeBlanc; M. Podesta; A.L. Roquemore; P.W. Ross
Abstract:
Atomic and molecular density data in the outer midplane of NSTX [Ono et al., Nucl. Fusion 40, 557 (2000)] are inferred from tangential camera data via a forward modeling procedure using the DEGAS 2 Monte Carlo neutral transport code. The observed Balmer-b light emission data from 17 shots during the 2010 NSTX campaign display no obvious trends with discharge parameters such as the divertor Balmer-a emission level or edge deuterium ion density. Simulations of 12 time slices in 7 of these discharges produce molecular densities near the vacuum vessel wall of 2–8 􏰁 10^17 m􏰈3 and atomic densities ranging from 1 to 7 􏰁 10^16 m􏰈3; neither has a clear correlation with other parameters. Validation of the technique, begun in an earlier publication, is continued with an assessment of the sensitivity of the simulated camera image and neutral densities to uncertainties in the data input to the model. The simulated camera image is sensitive to the plasma profiles and virtually nothing else. The neutral densities at the vessel wall depend most strongly on the spatial distribution of the source; simulations with a localized neutral source yield densities within a factor of two of the baseline, uniform source, case. The uncertainties in the neutral densities associated with other model inputs and assumptions are􏰅 50%.
Type:
Dataset
Issue Date:
August 2015

3. Observation of quasi-coherent edge fluctuations in Ohmic plasmas on NSTX

Author(s):
Banerjee, S.; A. Diallo; S.J. Zweben
Abstract:
A quasi-coherent mode with frequency f = 40 kHz is observed in Ohmic plasmas in NSTX with the gas puff imaging diagnostic (GPI). This mode is located predominantly just inside the separatrix, with a maximum fluctuation amplitude similar to that of the broadband turbulence in the same frequency range. The quasi-coherent mode has a poloidal wavelength 16 cm and a poloidal velocity 49 km/s in the electron diamagnetic direction, which are similar to the characteristics expected from a linear drift-wave like mode in the edge.
Type:
Dataset
Issue Date:
April 2016

4. Modeling of resistive plasma response in toroidal geometry using an asymptotic matching approach

Author(s):
Z. R. Wang; A. H. Glasser; D. Brennan; Y. Q. Liu; J-K. Park
Abstract:
The method of solving linear resistive plasma response, based on the asymptotic matching approach, is developed for full toroidal tokamaks by upgrading the Resistive DCON code [A.H. Glasser, Z.R. Wang and J.-K. Park, Physics of Plasmas, \textbf{23}, 112506 (2016)]. The derived matching matrix, asymptotically matching the outer and inner regions, indicates that the applied three dimension (3-D) magnetic perturbations contribute additional small solutions at each resonant surface due to the toroidal coupling of poloidal modes. In contrast, the resonant harmonic only affects the corresponding resonant surface in the cylindrical plasma. Since the solution of ideal outer region is critical to the asymptotic matching and is challenging to be solved in the toroidal geometry due to the singular power series solution at the resonant surfaces, systematic verification of the outer region $\Delta^\prime$ matrix is made by reproducing the well known analytical $\Delta^{\prime}$ result in [H.P. Furth, P.H. Rutherford and H. Selberg, The Physics of Fluids, \textbf{16}, 1054-1063 (1073)] as well as by making a quantitative benchmark with the PEST3 code [A. Pletzer and R.L. Dewar, J. Plasma Physics, \textbf{45}, 427-451 (1991)]. Finally, the reconstructed numerical solution of resistive plasma response from the toroidal matching matrix is presented. Comparing with the ideal plasma response, the global structure of the response can be affected by the small finite island at the resonant surfaces.
Type:
Dataset
Issue Date:
October 2020

5. Lower Hybrid Drift Waves During Guide Field Reconnection

Author(s):
Yoo, Jongsoo; Jeong-Young, Ji; M. V., Ambat; Shan, Wang; Hantao, Ji; Jenson, Lo; Bowen, Li; Yang, Ren; J., Jara-Almonte; William, Fox; Masaaki, Yamada; Andrew, Alt; Aaron, Goodman
Abstract:
Digital data for figures used in Lower Hybrid Drift Waves During Guide Field Reconnection, Geophysical Research Letters, 47, e2020GL087192, 2020.
Type:
Dataset
Issue Date:
29 October 2020

6. Implementation of higher-order velocity mapping between marker particles and grid in the particle-in-cell code XGC

Author(s):
Mollen Albert; Adams Mark F.; Knepley Matthew G.; Hager Robert; Chang C. S.
Abstract:
The global total-f gyrokinetic particle-in-cell code XGC, used to study transport in magnetic fusion plasmas or to couple with a core gyrokinetic code while functioning as an edge gyrokinetic code, implements a 5-dimensional (5D) continuum grid to perform the dissipative operations, such as plasma collisions, or to exchange the particle distribution function information with a core code. To transfer the distribution function between marker particles and a rectangular 2D velocity-space grid, XGC employs a bilinear mapping. The conservation of particle density and momentum is accurate enough in this bilinear operation, but the error in the particle energy conservation can become undesirably large and cause non-negligible numerical heating in a steep edge pedestal. In the present work we update XGC to use a novel mapping technique, based on the calculation of a pseudo-inverse, to exactly preserve moments up to the order of the discretization space. We describe the details of the implementation and we demonstrate the reduced interpolation error for a tokamak test plasma by using 1st- and 2nd-order elements with the pseudo-inverse method and comparing to the bilinear mapping.
Type:
Dataset
Issue Date:
March 2021

8. Data for: "The origin of non-skeletal carbonate mud and implications for global climate"

Author(s):
Geyman, Emily C.; Wu, Ziman; Nadeau, Matthew D.; Edmonsond, Stacey; Turner, Andrew; Purkis, Sam J.; Howes, Bolton; Dyer, Blake; Ahm, Anne-Sofie C.; Yao, Nan; Deutsch, Curtis A.; Higgins, John A.; Stolper, Daniel A.; Maloof, Adam C.
Abstract:
Carbonate mud represents one of the most important geochemical archives for reconstructing ancient climatic, environmental, and evolutionary change from the rock record. Mud also represents a major sink in the global carbon cycle. Yet, there remains no consensus about how and where carbonate mud is formed. In this contribution, we present new geochemical data that bear on this problem, including stable isotope and minor and trace element data from carbonate sources in the modern Bahamas such as ooids, corals, foraminifera, and green algae.
Type:
Dataset
Issue Date:
16 June 2022

11. ELM-free and inter-ELM divertor heat flux broadening induced by Edge Harmonics Oscillation in NSTX

Author(s):
Gan, K.; Ahn, J.-W.; Gray, T.K.; Zweben, S.J.; Fredrickson, E.D.; Scotti, F.; Maingi, R.; Park, J.-K.; Canal, G.P.; Soukhanovskii, V.A.; McLean, A.G.; Wirth, B.D.
Abstract:
A new n=1 dominated Edge Harmonic Oscillation (EHO) has been found in NSTX. The new EHO, rotating toroidally in the counter-current direction and the opposite direction of the neutral beam, was observed during certain inter-ELM and ELM-free periods of H-mode operation. This EHO is associated with a significant broadening of the integral heat flux width (?_int) by up to 150%, and a decrease in the divertor peak heat flux by >60%. An EHO induced filament was also observed by the gas puff imaging diagnostic. The toroidal rotating filaments could change the edge magnetic topology resulting in toroidal rotating strike point splitting and heat flux broadening. Experimental result of the counter current rotation of strike points splitting is consistent with the counter-current EHO.
Type:
Dataset
Issue Date:
December 2017

12. M3D-C1 simulations of the plasma response to RMPs in NSTX-U single-null and snowflake divertor configurations

Author(s):
Canal, G.P.; Ferraro, N.M.; Evans, T.E.; Osborne, T.H.; Menard, J.E.; Ahn, J.-W.; Maingi, R.; Wingen, A.; Ciro, D.; Frerichs, H.; Schmitz, O.; Soukhanovskii, V.; Waters, I.
Abstract:
Non-axisymmetric control coils and the so-called snowflake divertor configuration are two potential solutions proposed to solve two separate outstanding issues on the path towards self-sustained burning plasma operations, namely the transient energy bursts caused by edge localized modes and the steady state heat exhaust problem. In a reactor, these two proposed solutions would have to operate simultaneously and it is, therefore, important to investigate their compatibility and to identify possible conflicts that could prevent them from operating simultaneously. In this work, single- and two-fluid resistive magnetohydrodynamic calculations are used to investigate the effect of externally applied magnetic perturbations on the snowflake divertor configuration. The calculations are based on simulated NSTX-U plasmas and the results show that additional and longer magnetic lobes are created in the null-point region of the snowflake configuration, compared to those in the conventional single-null. The intersection of these longer and additional lobes with the divertor plates are expected to cause more striations in the particle and heat flux target profiles. In addition, the results indicate that the size of the magnetic lobes, in both single-null and snowflake configurations, are more sensitive to resonant magnetic perturbations than to non-resonant magnetic perturbations. The results also suggest that lower values of current in non-axisymmetric control coils would be required to suppress edge localized modes in plasmas with the snowflake configuration.
Type:
Dataset
Issue Date:
July 2017

13. Overview of NSTX Upgrade Initial Results and Modelling Highlights

Author(s):
Menard, J.E.; Allain, J.P.; Battaglia, D.J.; Bedoya, F.; Bell, R.E.; Belova, E.; Berkery, J.W.; Boyer, M.D.; Crocker, N.; Diallo, A.; Ebrahimi, F.; Ferrraro, N.; Fredrickson, E.; Frerichs, H.; Gerhardt, S.; Gorelenkov, N.; Guttenfelder, W.; Heidbrink, W.; Kaita, R.; Kaye, S.M.; Kriete, D.M.; Kubota, S.; LeBlanc, B.P.; Liu, D.; Lunsford, R.; Mueller, D.; Myers, C.E.; Ono, M.; Park, J.-K.; Podesta, M.; Raman, R.; Reinke, M.; Ren, Y.; Sabbagh, S.A.; Schmitz, O.; Scotti, F.; Sechrest, Y.; Skinner, C.H.; Smith, D.R.; Soukhanovskii, V.; Stoltzfus-Dueck, T.; Yuh, H.; Wang, Z.; Waters, I.; Ahn, J.-W.; Andre, R.; Barchfeld, R.; Beiersdorfer, P.; Bertelli, N.; Bhattacharjee, A.; Boyle, D.; Brennan, D.; Buttery, R.; Capece, A.; Canal, G.; Canik, J.; Chang, C.S.; Darrow, D.; Delgado-Aparicio, L.; Domier, C.; Ethier, S.; Evans, T.; Ferron, J.; Finkenthal, M.; Fonck, R.; Gan, K.; Gates, D.; Goumiri, I.; Gray, T.; Hosea, J.; Humphreys, D.; Jarboe, T.; Jardin, S.; Jaworski, M.A.; Koel, B.; Kolemen, E.; Ku, S.; LaHaye, R.J.; Levinton, F.; Luhmann Jr., N.; Maingi, R.; Maqueda, R.; McKee, G.; Meier, E.; Myra, J.; Perkins, R.; Poli, F.; Rhodes, T.; Riquezes, J.; Rowley, C.; Russell, D.; Schuster, E.; Stratton, B.; Stutman, D.; Taylor, G.; Tritz, K.; Wang, W.; Wirth, B.; Zweben, S.J.
Abstract:
The National Spherical Torus Experiment (NSTX) has undergone a major upgrade, and the NSTX Upgrade (NSTX-U) Project was completed in the summer of 2015. NSTX-U first plasma was subsequently achieved, diagnostic and control systems have been commissioned, H-Mode accessed, magnetic error fields identified and mitigated, and the first physics research campaign carried out. During 10 run weeks of operation, NSTX-U surpassed NSTX-record pulse-durations and toroidal fields, and high-performance ~1MA H-mode plasmas comparable to the best of NSTX have been sustained near and slightly above the n=1 no-wall stability limit and with H-mode confinement multiplier H98y2 above 1. Transport and turbulence studies in L-mode plasmas have identified the coexistence of at least two ion-gyro-scale turbulent micro-instabilities near the same radial location but propagating in opposite (i.e. ion and electron diamagnetic) directions. These modes have the characteristics of ion-temperature gradient and micro-tearing modes, respectively, and the role of these modes in contributing to thermal transport is under active investigation. The new second more tangential neutral beam injection was observed to significantly modify the stability of two types of Alfven Eigenmodes. Improvements in offline disruption forecasting were made in the areas of identification of rotating MHD modes and other macroscopic instabilities using the Disruption Event Characterization and Forecasting (DECAF) code. Lastly, the Materials Analysis and Particle Probe (MAPP) was utilized on NSTX-U for the first time and enabled assessments of the correlation between boronized wall conditions and plasma performance. These and other highlights from the first run campaign of NSTX-U are described.
Type:
Dataset
Issue Date:
October 2017

14. Femtosecond X-ray Diffraction of Laser-shocked Forsterite (Mg2SiO4) to 122 GPa

Author(s):
Kim, Donghoon; Tracy, Sally J.; Smith, Raymond F.; Gleason, Arianna E.; Bolme, Cindy A.; Prakapenka, Vitali B.; Appel, Karen; Speziable, Sergio; Wicks, June K.; Berryman, Eleanor J.; Han, Sirus K.; Schoelmerich, Markus O.; Lee, Hae Ja; Nagler, Bob; Cunningham, Eric F.; Akin, Minta C.; Asimow, Paul D.; Eggert, Jon H.; Duffy, Thomas S.
Abstract:
The behavior of forsterite, Mg2SiO4, under dynamic compression is of fundamental importance for understanding its phase transformations and high-pressure behavior. Here, we have carried out an in situ X-ray diffraction study of laser-shocked poly- and single-crystal forsterite (a-, b-, and c- orientations) from 19 to 122 GPa using the Matter in Extreme Conditions end-station of the Linac Coherent Light Source. Under laser-based shock loading, forsterite does not transform to the high-pressure equilibrium assemblage of MgSiO3 bridgmanite and MgO periclase, as was suggested previously. Instead, we observe forsterite and forsterite III, a metastable polymorph of Mg2SiO4, coexisting in a mixed-phase region from 33 to 75 GPa for both polycrystalline and single-crystal samples. Densities inferred from X-ray diffraction data are consistent with earlier gas-gun shock data. At higher stress, the behavior observed is sample-dependent. Polycrystalline samples undergo amorphization above 79 GPa. For [010]- and [001]-oriented crystals, a mixture of crystalline and amorphous material is observed to 108 GPa, whereas the [100]-oriented crystal adopts an unknown crystal structure at 122 GPa. The Q values of the first two sharp diffraction peaks of amorphous Mg2SiO4 show a similar trend with compression as those observed for MgSiO3 glass in both recent static and laser-compression experiments. Upon release to ambient pressure, all samples retain or revert to forsterite with evidence for amorphous material also present in some cases. This study demonstrates the utility of femtosecond free-electron laser X-ray sources for probing the time evolution of high-pressure silicates through the nanosecond-scale events of shock compression and release.
Type:
Dataset
Issue Date:
November 2020

15. Fast animal pose estimation using deep neural networks

Author(s):
Pereira, Talmo D.; Aldarondo, Diego E.; Willmore, Lindsay; Kislin, Mikhail; Wang, Samuel S.-H.; Murthy, Mala; Shaevitz, Joshua W.
Abstract:
Recent work quantifying postural dynamics has attempted to define the repertoire of behaviors performed by an animal. However, a major drawback to these techniques has been their reliance on dimensionality reduction of images which destroys information about which parts of the body are used in each behavior. To address this issue, we introduce a deep learning-based method for pose estimation, LEAP (LEAP Estimates Animal Pose). LEAP automatically predicts the positions of animal body parts using a deep convolutional neural network with as little as 10 frames of labeled data for training. This framework consists of a graphical interface for interactive labeling of body parts and software for training the network and fast prediction on new data (1 hr to train, 185 Hz predictions). We validate LEAP using videos of freely behaving fruit flies (Drosophila melanogaster) and track 32 distinct points on the body to fully describe the pose of the head, body, wings, and legs with an error rate of <3% of the animal's body length. We recapitulate a number of reported findings on insect gait dynamics and show LEAP's applicability as the first step in unsupervised behavioral classification. Finally, we extend the method to more challenging imaging situations (pairs of flies moving on a mesh-like background) and movies from freely moving mice (Mus musculus) where we track the full conformation of the head, body, and limbs.
Type:
Dataset
Issue Date:
30 May 2018

16. Hydrogen Retention in Lithium on Metallic Walls from “In Vacuo” Analysis in LTX and Implications for High-Z Plasma-Facing Components in NSTX-U

Author(s):
Kaita, R.; Lucia, M.; Allain, J. P.; Bedoya, F.; Capece, A.; Jaworski, M.; Koel, B. E.; Majeski, R.; Roszell, J.; Schmitt, J.; Scotti, F.; Skinner, C. H.; Soukhanovskii, V.
Abstract:
The application of lithium to plasma-facing components (PFCs) has long been used as a technique for wall conditioning in magnetic confinement devices to improve plasma performance. Determining the characteristics of PFCs at the time of exposure to the plasma, however, is difficult because they can only be analyzed after venting the vacuum vessel and removing them at the end of an operational period. The Materials Analysis and Particle Probe (MAPP) addresses this problem by enabling PFC samples to be exposed to plasmas, and then withdrawn into an analysis chamber without breaking vacuum. The MAPP system was used to introduce samples that matched the metallic PFCs of the Lithium Tokamak Experiment (LTX). Lithium that was subsequently evaporated onto the walls also covered the MAPP samples, which were then subject to LTX discharges. In vacuo extraction and analysis of the samples indicated that lithium oxide formed on the PFCs, but improved plasma performance persisted in LTX. The reduced recycling this suggests is consistent with separate surface science experiments that demonstrated deuterium retention in the presence of lithium oxide films. Since oxygen decreases the thermal stability of the deuterium in the film, the release of deuterium was observed below the lithium deuteride dissociation temperature. This may explain what occurred when lithium was applied to the surface of the NSTX Liquid Lithium Divertor (LLD). The LLD had segments with individual heaters, and the deuterium-alpha emission was clearly lower in the cooler regions. The plan for NSTX-U is to replace the graphite tiles with high-Z PFCs, and apply lithium to their surfaces with lithium evaporation. Experiments with lithium coatings on such PFCs suggest that deuterium could still be retained if lithium compounds form, but limiting their surface temperatures may be necessary.
Type:
Dataset
Issue Date:
2016

17. Advances in boronization on NSTX-Upgrade

Author(s):
Skinner, C.H.; Bedoya, F.; Scotti, F.; Allain, J.P.; Blanchard, W.; Cai, D.; Jaworski, M.; Koel, B.E.
Abstract:
Boronization has been effective in reducing plasma impurities and enabling access to higher density, higher confinement plasmas in many magnetic fusion devices. The National Spherical Torus eXperiment, NSTX, has recently undergone a major upgrade to NSTX-U in order to develop the physics basis for a ST-based Fusion Nuclear Science Facility (FNSF) with capability for double the toroidal field, plasma current, and NBI heating power and increased pulse duration from 1–1.5 s to 5–8 s. A new deuterated tri-methyl boron conditioning system was implemented together with a novel surface analysis diagnostic. We report on the spatial distribution of the boron deposition versus discharge pressure, gas injection and electrode location. The oxygen concentration of the plasma facing surface was measured by in-vacuo XPS and increased both with plasma exposure and with exposure to trace residual gases. This increase correlated with the rise of oxygen emission from the plasma.
Type:
Dataset
Issue Date:
January 2017

19. Laboratory study of the failed torus mechanism in arched, line-tied, magnetic flux ropes

Author(s):
Alt, Andrew; Ji, Hantao; Yoo, Jongsoo; Bose, Sayak; Goodman, Aaron; Yamada, Masaaki
Abstract:
Coronal mass ejections (CMEs) are some of the most energetic and violent events in our solar system. The prediction and understanding of CMEs is of particular importance due to the impact that they can have on Earth-based satellite systems, and in extreme cases, ground-based electronics. CMEs often occur when long-lived magnetic flux ropes (MFRs) anchored to the solar surface destabilize and erupt away from the Sun. One potential cause for these eruptions is an ideal magnetohydrodynamic (MHD) instability such as the kink or torus instability. Previous experiments on the Magnetic Reconnection eXperiment (MRX) revealed a class of MFRs that were torus-unstable but kink-stable, which failed to erupt. These “failed-tori” went through a process similar to Taylor relaxation where the toroidal current was redistributed before the eruption ultimately failed. We have investigated this behavior through additional diagnostics that measure the current distribution at the foot points and the energy distribution before and after an event. These measurements indicate that ideal MHD effects are sufficient to explain the energy distribution changes during failed torus events. This excludes Taylor relaxation as a possible mechanism of current redistribution during an event. A new model that only requires non-ideal effects in a thin layer above the electrodes is presented to explain the observed phenomena. This work broadens our understanding of the stability of MFRs and the mechanism behind the failed torus through the improved prediction of the torus instability and through new diagnostics to measure the energy inventory and current profile at the foot points.
Type:
Dataset
Issue Date:
2023

20. Microtearing Instabilities and Electron Thermal Transport in Low and High Collisionality NSTX Discharges

Author(s):
Rafiq T; Kaye S; Guttenfelder W; Weiland J; Schuster E; Anderson J; Luo L;
Abstract:
Microtearing mode (MTM) real frequency, growth rate, magnetic fluctuation amplitude and resulting electron thermal transport are studied in systematic NSTX scans of relevant plasma parameters. The dependency of the MTM real frequency and growth rate on plasma parameters, suitable for low and high collision NSTX discharges, is obtained by using the reduced MTM transport model [T. Rafiq, et al., Phys. Plasmas 23, 062507 (2016)]. The plasma parameter dependencies are compared and found to be consistent with the results obtained from MTM using the Gyrokinetic GYRO code. The scaling trend of collision frequency and plasma beta is found to be consistent with the global energy confinement trend observed in the NSTX experiment. The strength of the magnetic fluctuation is found to be consistent with the gyrokinetic estimate.In earlier studies, it was found that the version of the Multi-Mode (MM) anomalous transport model, which did not contain the effect of MTMs, provided an appropriate description of the electron temperature profiles in standard tokamak discharges and not in spherical tokamaks. When the MM model, which involves transport associated with MTMs, is incorporated in the TRANSP code and is used in the study of electron thermal transport in NSTX discharges, it is observed that the agreement with the experimental electron temperature profile is substantially improved.
Type:
Dataset
Issue Date:
February 2021