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Start Over Type Dataset Year Published 2018

1. Fast animal pose estimation using deep neural networks

Author(s):
Pereira, Talmo D.; Aldarondo, Diego E.; Willmore, Lindsay; Kislin, Mikhail; Wang, Samuel S.-H.; Murthy, Mala; Shaevitz, Joshua W.
Abstract:
Recent work quantifying postural dynamics has attempted to define the repertoire of behaviors performed by an animal. However, a major drawback to these techniques has been their reliance on dimensionality reduction of images which destroys information about which parts of the body are used in each behavior. To address this issue, we introduce a deep learning-based method for pose estimation, LEAP (LEAP Estimates Animal Pose). LEAP automatically predicts the positions of animal body parts using a deep convolutional neural network with as little as 10 frames of labeled data for training. This framework consists of a graphical interface for interactive labeling of body parts and software for training the network and fast prediction on new data (1 hr to train, 185 Hz predictions). We validate LEAP using videos of freely behaving fruit flies (Drosophila melanogaster) and track 32 distinct points on the body to fully describe the pose of the head, body, wings, and legs with an error rate of <3% of the animal's body length. We recapitulate a number of reported findings on insect gait dynamics and show LEAP's applicability as the first step in unsupervised behavioral classification. Finally, we extend the method to more challenging imaging situations (pairs of flies moving on a mesh-like background) and movies from freely moving mice (Mus musculus) where we track the full conformation of the head, body, and limbs.
Type:
Dataset
Issue Date:
30 May 2018

2. Plasma boundary shape control and real-time equilibrium reconstruction on NSTX-U

Author(s):
Boyer, M.; Battaglia, D.; Mueller, D.; Eidietis, N.; Erickson, K.; Ferron, J.; Gates, D.; Gerhardt, S.; Johnson, R.; Kolemen, E.; Menard, J.; Myers, C.; Sabbagh, S.; Scotti, F.; Vail, P.
Abstract:
The upgrade to the National Spherical Torus eXperiment (NSTX-U) included two main improvements: a larger center-stack, enabling higher toroidal field and longer pulse duration, and the addition of three new tangentially aimed neutral beam sources, which increase available heating and current drive, and allow for flexibility in shaping power, torque, current, and particle deposition profiles. To best use these new capabilities and meet the high-performance operational goals of NSTX-U, major upgrades to the NSTX-U Control System (NCS) hardware and software have been made. Several control algorithms, including those used for real-time equilibrium reconstruction and shape control, have been upgraded to improve and extend plasma control capabilities. As part of the commissioning phase of first plasma operations, the shape control system was tuned to control the boundary in both inner-wall limited and diverted discharges. It has been used to accurately track the requested evolution of the boundary (including the size of the inner gap between the plasma and central solenoid, which is a challenge for the ST configuration), X-point locations, and strike point locations, enabling repeatable discharge evolutions for scenario development and diagnostic commissioning.
Type:
Dataset
Issue Date:
March 2018

3. ELM frequency enhancement and discharge modification through lithium granule injection into EAST H-modes

Author(s):
Lunsford; Hsu, J.S.; Sun, Z.; Maingi, R.; Mansfield, D.K.; Xu, W.; Zuo, G.Z.; Huang, M.; Diallo, A.; Osborne, T.; Tritz, K.; Canik, J.; Meng, X.C.; Gong, X.Z.; Wan, B.N.; Li, J.G.; EAST Team
Abstract:
The injection of impurity granules into fusion research discharges can serve as a catalyst for ELM events. For sufficiently low ELM frequencies, and granule sizes above a threshold, this can result in full control of the ELM cycle, referred to as ELM pacing. For this research, we extend the investigation to conditions where the natural ELM frequency is too high for ELM pacing to be realized. Utilizing multiple sizes of lithium granules and classifying their effects by granule size, we demonstrate that ELM mitigation through frequency multiplication can be used at ELM triggering rates that nominally make ELM pacing unrealizable. We find that above a size threshold, injected granules promptly trigger ELMs and commensurately enhance the ELM frequency . Below this threshold size, injection of an individual granule does not always lead to the prompt triggering of an ELM; however, collective ablation in the edge pedestal region does enhance the ELM frequency. Specifically, Li granules too small to individually trigger ELMs were injected into EAST H-mode discharges at frequencies up to 2.3 kHz; collectively the granules were observed to enhance the natural ELM frequency up to 620 Hz, resulting in a ~2.4x multiplication of the natural ELM frequency and a 50% decrease of the ELM size.
Type:
Dataset
Issue Date:
October 2018

4. Effects of Axial Boundary Conductivity on a Free Stewartson-Shercliff Layer

Author(s):
Caspary, Kyle J.; Choi, Dahan; Ebrahimi, Fatima; Gilson, Erik P.; Goodman, Jeremy; Ji, Hantao
Abstract:
The effects of axial boundary conductivity on the formation and stability of a magnetized free Stewartson-Shercliff layer (SSL) in a short Taylor-Couette device are reported. As the axial field increases with insulating endcaps, hydrodynamic Kelvin-Helmholtz-type instabilities set in at the SSLs of the conducting fluid, resulting in a much reduced flow shear. With conducting endcaps, SSLs respond to an axial field weaker by the square root of the conductivity ratio of endcaps to fluid. Flow shear continuously builds up as the axial field increases despite the local violation of the Rayleigh criterion, leading to a large number of hydrodynamically unstable modes. Numerical simulations of both the mean flow and the instabilities are in agreement with the experimental results.
Type:
Dataset
Issue Date:
2018

6. Whistler wave generation by anisotropic tail electrons during asymmetric magnetic reconnection in space and laboratory

Author(s):
Yoo, Jongsoo; Jara-almonte, J.; Yerger, Evan; Wang, Shan; Qian, Tony; Le, Ari; Ji, Hantao; Yamada, Masaaki; Fox, William; Kim, Eun-Hwa; Chen, Li-Jen; Gershman, Daniel
Abstract:
Whistler wave generation near the magnetospheric separatrix during reconnection at the dayside magnetopause is studied with data from the Magnetospheric Multiscale (MMS) mission. The dispersion relation of the whistler mode is measured for the first time near the reconnection region in space, which shows that whistler waves propagate nearly parallel to the magnetic field line. A linear analysis indicates that the whistler waves are generated by temperature anisotropy in the electron tail population. This is caused by loss of electrons with a high velocity parallel to the magnetic field to the exhaust region. There is a positive correlation between activities of whistler waves and the lower-hybrid drift instability (LHDI) both in laboratory and space, indicating the enhanced transport by LHDI may be responsible for the loss of electrons with a high parallel velocity.
Type:
Dataset
Issue Date:
August 2018

7. Modeling of a Laser-Induced Rydberg Spectroscopy diagnostic for Direct Measurement of the Local Electric Field in the Edge Region of NSTX/NSTX-U

Author(s):
Reymond, L.; Diallo, A.; Vekselman, V.
Abstract:
We discuss a novel diagnostic allowing direct measurements of the local electric field in the edge region in NSTX/NSTX-U. This laser based diagnostic's principle consists of depleting the naturally populated $n=3$ level to a Rydberg state --sensitive to electric fields-- that will result in a suppression of part of the $D_{\alpha}$ emission. We refer to this approach as Laser-Induced Rydberg Spectroscopy (LIRyS). It is shown that the local electric field can be measured through the Stark induced resonances observed as dips in the $D_\alpha$ emission. Using forward-modeling of simulated absorption spectra, we show precisions reaching \SI{\pm 2}{\kilo\volt\per\meter} in regions with a local electric field of \SI{15}{\kilo\volt\per\meter}.
Type:
Dataset
Issue Date:
July 2018

8. Calibrationless rotating Lorentz-force flowmeters for low flow rate applications

Author(s):
Hvasta, M. G.; Dudt, D.; Fisher, A. E.; Kolemen, E.
Abstract:
A 'weighted magnetic bearing' has been developed to improve the performance of rotating Lorentz-force flowmeters (RLFFs). Experiments have shown that the new bearing reduces frictional losses within a double-sided, disc-style RLFF to negligible levels. Operating such an RLFF under 'frictionless' conditions provides two major benefits. First, the steady-state velocity of the RLFF magnets matches the average velocity of the flowing liquid at low flow rates. This enables an RLFF to make accurate volumetric flow measurements without any calibration or prior knowledge of the fluid properties. Second, due to minimized frictional losses, an RLFF is able to measure low flow rates that cannot be detected when conventional, high-friction bearings are used. This paper provides a brief background on RLFFs, gives a detailed description of weighted magnetic bearings, and compares experimental RLFF data to measurements taken with a commercially available flowmeter.
Type:
Dataset
Issue Date:
29 May 2018

9. Design and measurement methods for a lithium vapor box similarity experiment

Author(s):
Schwartz, J. A.; Emdee, E. D.; Jaworski, M. A; Goldston, R. J.
Abstract:
The lithium vapor box divertor is a concept for handling the extreme divertor heat fluxes in magnetic fusion devices. In a baffled slot divertor, plasma interacts with a dense cloud of Li vapor which radiates and cools the plasma, leading to recombination and detachment. Before testing on a tokamak the concept should be validated: we plan to study detachment and heat redistribution by a Li vapor cloud in laboratory experiments. Mass changes and temperatures are measured to validate a Direct Simulation Monte Carlo model of neutral Li. The initial experiment involves a 5 cm diameter steel box containing 10g of Li held at 650 degrees C as vapor flows out a wide nozzle into a similarly-sized box at a lower temperature. Diagnosis is made challenging by the required material compatibility with lithium vapor. Vapor pressure is a steep function of temperature, so to validate mass flow models to within 10%, absolute temperature to within 4.5K is required. The apparatus is designed to be used with an analytical balance to determine mass transport. Details of the apparatus and methods of temperature and mass flow measurements are presented.
Type:
Dataset
Issue Date:
August 2018

10. Regional hydroclimatic variability due to contemporary deforestation in southern Amazonia and associated boundary layer characteristics

Author(s):
Khanna, Jaya; Medvigy, David; Fisch, Gilberto; Neves, Theomar Trindade de Araújo Tiburtino
Abstract:
Amazonian deforestation causes systematic changes in regional dry season precipitation. Some of these changes at contemporary large scales (a few hundreds of kilometers) of deforestation have been associated with a ‘dynamical mesoscale circulation’, induced by the replacement of rough forest with smooth pasture. In terms of decadal averages, this dynamical mechanism yields increased precipitation in downwind regions and decreased precipitation in upwind regions of deforested areas. Daily, seasonal, and interannual variations in this phenomenon may exist, but have not yet been identified or explained. This study uses observations and numerical simulations to develop relationships between the dynamical mechanism and the local- and continental-scale atmospheric conditions across a range of time scales. It is found that the strength of the dynamical mechanism is primarily controlled by the regional-scale thermal and dynamical conditions of the boundary layer, and not by the continental- and global-scale atmospheric state. Lifting condensation level and wind speed within the boundary layer have large and positive correlations with the strength of the dynamical mechanism. The strength of these relationships depends on time scale and is strongest over the seasonal cycle. Overall, the dynamical mechanism is found to be strongest during times when the atmosphere is relatively stable. Hence, for contemporary large scales of deforestation this phenomenon is found to be the prevalent convective triggering mechanism during the dry and parts of transition seasons (especially during the dry-to-wet transition), significantly affecting the hydroclimate during this period.
Type:
Dataset and Software
Issue Date:
2018