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21. Data Files for "Arranged Cohabitation among Chinese Muslims"

Author(s):
Yu, Xie; Qing, Lai; Zheng, Mu
Abstract:
Data from the 2007 Developmental Idealism survey conducted in Gansu province in China's northwestern borderlands reveal that Muslims of the Hui and Dongxiang ethnicities reported much higher rates of cohabitation experience than the secular majority Han. Based on follow-up qualitative interviews, we found the answer to lie in the interplay between the highly interventionist Chinese state and the robust cultural resilience of local Islamic communities. Using the 2000 census data and the 2010 China Family Panel Studies data, we further show that women in almost all ten Muslim ethnic groups have higher percentages of underage births and premarital births than Han women, both nationally and in the northwest where most Chinese Muslims live. As the once-outlawed behavior of cohabitation became more socially acceptable during the reform and opening-up era, young Muslim Chinese often found themselves in “arranged cohabitations” as de facto marriages formed at younger-than-legal ages.
Type:
Dataset
Issue Date:
January 2024

23. Data for 'Co-benefits of Transport Demand Reductions from Compact Urban Development in Chinese Cities'

Author(s):
Fu, Xiangwen; Cheng, Jing; Peng, Liqun; Zhou, Mi; Tong, Dan; Mauzerall, Denise L.
Abstract:
This dataset is created for the paper titled 'Co-benefits of Transport Demand Reductions from Compact Urban Development in Chinese Cities' and published on Nature Sustainability. We construct 6 scenarios of compact urban development, alternative energy vehicle deployment, and power decarbonization to explore the co-benefits of transport demand reductions via compact urban development for carbon emissions, energy use, air quality, and human health in China in 2050. This dataset provides the following gridded information for the scenarios: (1) monthly mean surface PM2.5 concentrations from the WRF-Chem model; (2) annual PM2.5-related premature deaths calculated by the GEMM model; (3) 2015 population in China; (4) mask for provinces in China; (5) longitude and latitude of each grid center.
Type:
Dataset
Issue Date:
January 2024

27. Data Files for "Declining Chinese Attitudes toward the United States amid COVID-19"

Author(s):
Xie, Yu; Huang, Junming; He, Yuchen; Yang, Feng; Zhou, Yi; Qian, Yue; Cai, Weicheng; Zhou, Jie
Abstract:
This dataset encompasses three distinct sets of data analyzed in the study, namely the survey data on favorability to the US, the survey data on trust in Americans, and the social media data.
Type:
Dataset
Issue Date:
December 2023

28. QCL Dataset, 10 Layer Structure, Tolerance [-2, +3] A, Electric Field [0,10,150] kV/cm

Author(s):
Hernandez, Andres Correa; Gmachl, Claire F.
Abstract:
This dataset contains 1800 quantum cascade (QC) structures generated by randomly modifying an initial 10-layer design in the tolerance range of -2 to +3 Angstroms at an applied electric field range of 0 to 150 kV/cm (in 10 kV/cm increments). One structure at one electric field is one design, thus there are 27000 unique designs, represented as a row in the dataset. The layer thicknesses (in angstroms) and the electric field are inputs which get evaluated using a Schrödinger solver, ErwinJr2, to identify the laser transition Figure of Merit (fom*), among other reported outputs.
Type:
Dataset
Issue Date:
December 2023

32. Data from "A Neural Network Water Model Based on the MB-pol Many-Body Potential"

Author(s):
Muniz, Maria Carolina
Abstract:
This dataset contains input files, training data and other files related to the machine learning models developed during the work by Muniz et al. In this work, we construct machine learning models based on the MB-pol many-body model. We find that the training set should include cluster configurations as well as liquid phase configurations in order to accurately represent both liquid and VLE properties. The results attest for the ability of machine learning models to accurately represent many-body potentials and provide an efficient avenue for water simulations.
Type:
Dataset
Issue Date:
27 September 2023

34. Drosophila melanogaster Long Timescale Data 2022

Author(s):
McKenze-Smith, Grace C.; Wolf, Scott W.
Abstract:
This dataset contains lifetime recordings and associated postural data and ethograms for 47 male Drosophila melanogaster.
Type:
Dataset and MovingImage
Issue Date:
September 2023

35. Raw Data for GrsA Sub-domain Dynamics

Author(s):
Sun, Xun; Alfermann, Jonas; Li, Hao; Watkins, Maxwell B.; Chen, Yi-Tsao; Chu, Jhih-Wei; Ando, Nozomi
Abstract:
This repository contains the raw photon-by-photon single-molecule FRET (smFRET) trajectories, SAXS data, and MD simulation trajectories, multi-sequence alignment, and gel images for the paper titled "Sub-Domain Dynamics Enables Chemical Chain Reactions in Nonribosomal Peptide Synthetases."
Type:
Dataset
Issue Date:
2 August 2023

36. Large-Eddy Simulation and Statistical Metric Results for Patterned Sea Ice Surfaces

Author(s):
Fogarty, Joseph
Abstract:
Large-eddy simulations were employed over five different sea ice patterns, with a constant ice fraction, to test if the overlying atmospheric boundary layer (ABL) dynamics and thermodynamics differs. The results of these simulations were used to determine that there were differences in vertical heat flux, momentum flux, and horizontal wind speed, and that more surface information is needed to predict the ABL over the sea ice surface. To see what other surface information is needed, twenty-two landscape metrics were calculated over forty-four different maps at differing resolutions, using the FRAGSTATs program. The results of that analysis are available in a .csv file in this dataset.
Type:
Dataset
Issue Date:
August 2023

37. Supplementary spatial data for Available Land for Cellulosic Biofuel Production: A Supply Chain Centered Comparison

Author(s):
O'Neill, Eric; Lark, Tyler; Xie, Yanhua; Basso, Bruno
Abstract:
Collection of the underlying spatially explicit data for Available Land for Cellulosic Biofuel Production: A Supply Chain Centered Comparison. Includes raw biomass yield data and soil carbon sequestration potential data for three types of marginal land for the USA midwest at the field level including field areas. Collection also includes raw land rasters for the three types of marginal land, model parameters for the MILP model used in the study, and results used to generate the figures in the paper.
Type:
Dataset
Issue Date:
28 July 2023

38. Data for "Stability and Kinetics of Iron-Terephthalate MOFs with Diverse Structures in Aqueous Pollutant Degradation"

Author(s):
Sarazen, Michele; Moore, Samuel
Abstract:
Numerical data is tabulated for all plots (Figures 2, 3a-b, 4-89, S1, S4a-b,d, S5a-b,d, S6-S156) and included as separate spreadsheets categorized by figure in a .zip file in the Supplementary Material. Error bars in Figure 4 show the spread of data observed for 4 and 5 trials on independent samples for MIL-101 and MOF-235, respectively. Figure 6a shows the average of triplicate filtrate test conversions with error propagated based on this spread. Figures 6b and S165 error bars on rate constants are determined based on propagated conversion uncertainty for independent trials and extracted standard deviations of pseudo-first order rate constants from linearized plots. Error bars on other plots represent propagation of experimental uncertainty on single trials.
Type:
Dataset
Issue Date:
19 June 2023

39. Data for: Persistent hepatitis B virus and HIV coinfections in dually humanized mice engrafted with human liver and immune system

Author(s):
Ploss, Alexander; Hogan, Glenn; Winer, Benjamin; Ahodantin, James; Sellau, Julie; Huang, Tiffany; Douam, Florian; Funaki, Masaya; Chiriboga, Luis; Su, Lishan
Abstract:
Chronic hepatitis B (CHB), caused by hepatitis B virus (HBV), remains a major medical problem. HBV has a high propensity for progressing to chronicity and can result in severe liver disease, including fibrosis, cirrhosis and hepatocellular carcinoma. CHB patients frequently present with viral coinfection, including HIV and hepatitis delta virus. About 10% of chronic HIV carriers are also persistently infected with HBV which can result in more exacerbated liver disease. Mechanistic studies of HBV-induced immune responses and pathogenesis, which could be significantly influenced by HIV infection, have been hampered by the scarcity of immunocompetent animal models. Here, we demonstrate that humanized mice dually engrafted with components of a human immune system and a human liver supported HBV infection, which was partially controlled by human immune cells, as evidenced by lower levels of serum viremia and HBV replication intermediates in the liver. HBV infection resulted in priming and expansion of human HLA-restricted CD8+ T cells, which acquired an activated phenotype. Notably, our dually humanized mice support persistent coinfections with HBV and HIV which opens opportunities for analyzing immune dysregulation during HBV and HIV coinfection and preclinical testing of novel immunotherapeutics.
Type:
Dataset
Issue Date:
12 June 2023

40. Thermodynamic and Dynamics Data for Coarse-grained Intrinsically Disordered Proteins Generated by Active Learning

Author(s):
Webb, Michael; Jacobs, William; An, Yaxin; Oliver, Wesley
Abstract:
This distribution compiles thermodynamic and (where available) dynamic properties of short protein sequences as obtained from coarse-grained molecular dynamics simulations. The dataset features 2114 protein sequences with sequence lengths ranging from N=20 up to N=50 amino acids. The simulation and analysis of these sequences is described in "Active learning of the thermodynamics--dynamics tradeoff in protein condensates'' by Yaxin An, Michael A. Webb*, and William M. Jacobs* (https://doi.org/10.48550/arXiv.2306.03696). Of the 2114 protein sequences, 80 are homomeric polypeptides (replicating a single amino acid for N = 20, 30, 40, and 50), 1266 are sourced from version 9.0 of the DisProt database, and the remaining 768 sequences are novel sequences generated during an active learning campaign described in the aforementioned manuscript. The simulations were performed using the LAMMPS molecular dynamics engine. The interactions used for simulation are obtained from R. M. Regy , J. Thompson , Y. C. Kim and J. Mittal , Improved coarse-grained model for studying sequence dependent phase separation of disordered proteins, Protein Sci., 2021, 1371 —1379. Properties included in this distribution include second virial coefficients, pressure-density data, expectation for phase behavior at 300 K, estimated condensed-phase densities at 300 K (if exist), and condensed-phase self-diffusion coefficients at 300 K (if exist).
Type:
Dataset
Issue Date:
6 June 2023